print.summary.RJaCGH: print summary of RJaCGH fit

In RJaCGH: Reversible Jump MCMC for the Analysis of CGH Arrays

Description

The list stored in summary.RJaCGH is printed.

Usage

## S3 method for class 'summary.RJaCGH'
print(x, ...)
## S3 method for class 'summary.RJaCGH.Chrom'
print(x, ...)
## S3 method for class 'summary.RJaCGH.Genome'
print(x, ...)

Arguments

x	a summary.RJaCGH object
...	Additional arguments passed to print

Value

The summary is printed

Author(s)

Oscar M. Rueda and Ramon Diaz Uriarte

References

Rueda OM, Diaz-Uriarte R. Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH. PLoS Comput Biol. 2007;3(6):e122

See Also

RJaCGH, states, modelAveraging, plot.RJaCGH, trace.plot

Examples

y <- c(rnorm(100, 0, 1), rnorm(10, -3, 1), rnorm(20, 3, 1), rnorm(100,
0, 1))
Pos <- sample(x=1:500, size=230, replace=TRUE)
Pos <- cumsum(Pos)
Chrom <- rep(1:23, rep(10, 23))
jp <- list(sigma.tau.mu=rep(0.5, 5), sigma.tau.sigma.2=rep(0.3, 5),
sigma.tau.beta=rep(0.7, 5), tau.split.mu=0.5, tau.split.beta=0.5)
fit.chrom <- RJaCGH(y=y, Pos=Pos, Chrom=Chrom, model="Chrom",
burnin=10, TOT=100, jump.parameters=jp, k.max = 5)
summary(fit.chrom)

RJaCGH documentation built on May 2, 2019, 3:34 p.m.