readMarkVcv: Reads binary file output from MARK and returns a list of the...

In RMark: R Code for Mark Analysis

Reads binary file output from MARK and returns a list of the results

Description

Window and linux versions to read binary files created by MARK. This function written by Jim Hines and modified by Jeff Laake to add derived_labels, replaces read.mark.binary and read.mark.binary.linux

Usage

readMarkVcv(f = "mark001.vcv", derived_labels)

Arguments

f	filename specification for binary output file from MARK;named here as markxxx.vcv
derived_labels	vector of labels for derived parameters; NULL if no derived parameters for model

Value

List of estimates, se, lcl, ucl and var-cov matrices for beta, real and derived estimates

beta	Dataframe for beta parameters containing estimates, se, lcl, ucl
beta.vcv	variance-covariance matrix for beta estimates
real	Dataframe for real parameters containing estimates, se, lcl, ucl
real.vcv	variance-covariance matrix for real estimates
derived	list of Dataframes for derived parameters (if any) containing estimates, se, lcl, ucl
derived.vcv	variance-covariance matrix for derived estimates (if any)

Author(s)

Jim Hines, Jeff Laake

See Also

extract.mark.output

Examples

#a=readMarkVcv('~/../Downloads/mark005.vcv')
#str(a)

RMark documentation built on Aug. 14, 2022, 1:05 a.m.