Description Usage Arguments Details Value Author(s) References See Also Examples
stabilitySelection
implements the regularization parameter selection
of (Liu et al., 2010) called 'Stability Approach to Regularization Selection'
(StARS).
1 | stabilitySelection(counts, lambdas = NULL, B = 20)
|
counts |
a n x p matrix of RNA-seq expression (numeric matrix or data frame) |
lambdas |
a sequence of decreasing positive numbers to control the
regularization (numeric vector). Default to |
B |
number of iterations for stability selection. Default to 20 |
When input lambdas
are null the default sequence of
glmnet
(see GLMnetwork
for details).
S3 object of class stabilitySelection
: a list consisting of
lambdas
numeric regularization parameters used for
regularization path
B
number of iterations for stability selection
best
index of the regularization parameter selected by StARS
in lambdas
variabilities
numeric vector having same length than lambdas
and providing the variability value as defined by StARS along the path
Alyssa Imbert, alyssa.imbert@gmail.com Nathalie Vialaneix, nathalie.vialaneix@inrae.fr
Liu, H., Roeber, K. and Wasserman, L. (2010) Stability approach to regularization selection (StARS) for high dimensional graphical models. In Proceedings of Neural Information Processing Systems (NIPS 2010), 23, 1432-1440, Vancouver, Canada.
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