varIntra: Average intra-donor pool variance.

In RNAseqNet: Log-Linear Poisson Graphical Model with Hot-Deck Multiple Imputation

Description

varIntra computes the average intra-donor pool variance.

Usage

varIntra(X, Y, donors)

Arguments

X	n x p numeric matrix containing RNA-seq expression with missing rows (numeric matrix or data frame)
Y	auxiliary dataset (n' x q numeric matrix or data frame)
donors	donor pool (a list, as given $donors obtained from the function imputeHD)

Value

varIntra returns a numeric value which is the average intra-donor pool variance, as described in (Imbert et al., 2018).

Author(s)

Alyssa Imbert, [e-mail]

Nathalie Vialaneix, [e-mail]

References

Imbert, A., Valsesia, A., Le Gall, C., Armenise, C., Lefebvre, G. Gourraud, P.A., Viguerie, N. and Villa-Vialaneix, N. (2018) Multiple hot-deck imputation for network inference from RNA sequencing data. Bioinformatics. doi: 10.1093/bioinformatics/btx819.

See Also

imputeHD, chooseSigma

RNAseqNet documentation built on July 2, 2020, 4:15 a.m.