Man pages for RNAseqQC
Quality Control for RNA-Seq Data
| all_numeric | for a character vector x, check if all non-NA elements of x... |
| filter_genes | Filter genes with low counts |
| get_gene_id | Get all gene IDs in a DESeqDataSet for a given gene name. |
| make_dds | Make DESeqDataSet from counts matrix and metadata |
| mean_sd_plot | Create a mean-sd plot Make a scatterplot that shows for each... |
| plot_biotypes | Plot number of counts per sample and biotype |
| plot_chromosome | Plot gene expression along a chromosome |
| plot_gene | Plot a gene |
| plot_gene_detection | Plot number of detected genes for each sample |
| plot_library_complexity | Plot the library complexity |
| plot_loadings | Plot loadings of a principal component |
| plot_ma | MA-plot of a differential testing result |
| plot_pca | Plot results of a principal component analysis |
| plot_pca_scatters | Plot matrix of PCA scatter plots |
| plot_sample_clustering | Plot clustering of samples in a distance heatmap |
| plot_sample_MAs | MA plots of samples |
| plot_total_counts | Plot total counts per sample |
| plot_within_level_sample_MAs | Plot correlations of samples within a level of a group |
| RNAseqQC-package | RNAseqQC: Quality Control for RNA-Seq Data |
| save_plots_to_pdf | Save list of plots to PDF |
| T47D | The T47D cell line data of RNA-seq experiment GSE89888 |
| T47D_diff_testing | Differential expression results corresponding to the T47D... |
