plot_gene_detection: Plot number of detected genes for each sample

In RNAseqQC: Quality Control for RNA-Seq Data

Plot number of detected genes for each sample

Description

For specified thresholds, the number of detected genes is shown for each sample.

Usage

plot_gene_detection(dds, thresholds = c(3, 10, 20, 50))

Arguments

dds	A DESeqDataSet
thresholds	Vector of thresholds for which the number of genes with counts greater or equal than the thresholds is plotted

Value

A ggplot object of the ggplot2 package that contains the gene detection plot.

Examples

library("DESeq2")
set.seed(1)
dds <- makeExampleDESeqDataSet()
plot_gene_detection(dds)

RNAseqQC documentation built on July 1, 2024, 9:07 a.m.