filter_genes: Filter genes with low counts
In RNAseqQC: Quality Control for RNA-Seq Data
View source: R/preprocessing.R
filter_genes R Documentation
Filter genes with low counts
Description
Filter genes with low counts
Usage
filter_genes(dds, min_count = 5, min_rep = 3)
Arguments
dds
A DESeqDataSet
min_count, min_rep
keep genes with at least min_count counts in at least min_rep replicates
Value
A DESeq2::DESeqDataSet object with only those genes that meet the filter criteria.
Examples
library("DESeq2")
dds <- makeExampleDESeqDataSet()
filter_genes(dds)
RNAseqQC documentation built on July 1, 2024, 9:07 a.m.
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View source: R/preprocessing.R
| filter_genes | R Documentation |
Filter genes with low counts
Description
Filter genes with low counts
Usage
filter_genes(dds, min_count = 5, min_rep = 3)
Arguments
dds |
A DESeqDataSet |
min_count, min_rep |
keep genes with at least min_count counts in at least min_rep replicates |
Value
A DESeq2::DESeqDataSet object with only those genes that meet the filter criteria.
Examples
library("DESeq2")
dds <- makeExampleDESeqDataSet()
filter_genes(dds)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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