RNiftyReg: Image Registration Using the NiftyReg Library

Provides an R interface to the NiftyReg image registration tools <http://sourceforge.net/projects/niftyreg/>. Linear and nonlinear registration are supported, in two and three dimensions.

AuthorJon Clayden, based on original code by Marc Modat, Pankaj Daga and others
Date of publication2016-12-08 15:49:10
MaintainerJon Clayden <code@clayden.org>
LicenseGPL-2
Version2.4.1
https://github.com/jonclayden/RNiftyReg

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Files in this package

RNiftyReg
RNiftyReg/inst
RNiftyReg/inst/extdata
RNiftyReg/inst/extdata/flash_t1.nii.gz
RNiftyReg/inst/extdata/mni_brain.nii.gz
RNiftyReg/inst/extdata/house_colour_large.jpg
RNiftyReg/inst/extdata/control.nii.gz
RNiftyReg/inst/extdata/house_colour.png
RNiftyReg/inst/extdata/affine.txt
RNiftyReg/inst/extdata/epi_t2.nii.gz
RNiftyReg/inst/extdata/house.png
RNiftyReg/tests
RNiftyReg/tests/testthat
RNiftyReg/tests/testthat/test-15-affine.R
RNiftyReg/tests/testthat/test-20-niftyreg.R
RNiftyReg/tests/testthat/flirt.mat
RNiftyReg/tests/testthat/test-25-transform.R
RNiftyReg/tests/testthat/test-30-multireg.R
RNiftyReg/tests/test-all.R
RNiftyReg/src
RNiftyReg/src/Makevars
RNiftyReg/src/DeformationField.cpp
RNiftyReg/src/RNifti.cpp
RNiftyReg/src/aladin.cpp
RNiftyReg/src/reg-lib
RNiftyReg/src/reg-lib/Kernels.h
RNiftyReg/src/reg-lib/_reg_aladin_sym.cpp
RNiftyReg/src/reg-lib/AffineDeformationFieldKernel.h
RNiftyReg/src/reg-lib/_reg_aladin.cpp
RNiftyReg/src/reg-lib/cpu
RNiftyReg/src/reg-lib/cpu/_reg_macros.h
RNiftyReg/src/reg-lib/cpu/_reg_globalTrans.cpp
RNiftyReg/src/reg-lib/cpu/_reg_nmi.h
RNiftyReg/src/reg-lib/cpu/CPUKernels.cpp
RNiftyReg/src/reg-lib/cpu/CPUBlockMatchingKernel.h
RNiftyReg/src/reg-lib/cpu/CPUResampleImageKernel.h
RNiftyReg/src/reg-lib/cpu/CPUAffineDeformationFieldKernel.cpp
RNiftyReg/src/reg-lib/cpu/_reg_thinPlateSpline.h
RNiftyReg/src/reg-lib/cpu/CPUConvolutionKernel.h
RNiftyReg/src/reg-lib/cpu/_reg_KLdivergence.h
RNiftyReg/src/reg-lib/cpu/_reg_blockMatching.h
RNiftyReg/src/reg-lib/cpu/CPUOptimiseKernel.h
RNiftyReg/src/reg-lib/cpu/_reg_tools.cpp
RNiftyReg/src/reg-lib/cpu/CPUBlockMatchingKernel.cpp
RNiftyReg/src/reg-lib/cpu/_reg_maths.h
RNiftyReg/src/reg-lib/cpu/_reg_localTrans_jacobian.cpp
RNiftyReg/src/reg-lib/cpu/_reg_localTrans.h
RNiftyReg/src/reg-lib/cpu/_reg_globalTrans.h
RNiftyReg/src/reg-lib/cpu/_reg_KLdivergence.cpp
RNiftyReg/src/reg-lib/cpu/_reg_resampling.cpp
RNiftyReg/src/reg-lib/cpu/_reg_polyAffine.cpp
RNiftyReg/src/reg-lib/cpu/_reg_measure.h
RNiftyReg/src/reg-lib/cpu/CPUOptimiseKernel.cpp
RNiftyReg/src/reg-lib/cpu/_reg_optimiser.h
RNiftyReg/src/reg-lib/cpu/CPUKernels.h
RNiftyReg/src/reg-lib/cpu/CPUKernelFactory.h
RNiftyReg/src/reg-lib/cpu/CPUKernelFactory.cpp
RNiftyReg/src/reg-lib/cpu/_reg_femTrans.cpp
RNiftyReg/src/reg-lib/cpu/CPUConvolutionKernel.cpp
RNiftyReg/src/reg-lib/cpu/_reg_localTrans_regularisation.cpp
RNiftyReg/src/reg-lib/cpu/_reg_maths.cpp
RNiftyReg/src/reg-lib/cpu/_reg_dti.h
RNiftyReg/src/reg-lib/cpu/CPUAffineDeformationFieldKernel.h
RNiftyReg/src/reg-lib/cpu/_reg_ssd.cpp
RNiftyReg/src/reg-lib/cpu/_reg_tools.h
RNiftyReg/src/reg-lib/cpu/_reg_resampling.h
RNiftyReg/src/reg-lib/cpu/_reg_polyAffine.h
RNiftyReg/src/reg-lib/cpu/_reg_blockMatching.cpp
RNiftyReg/src/reg-lib/cpu/_reg_ssd.h
RNiftyReg/src/reg-lib/cpu/CPUResampleImageKernel.cpp
RNiftyReg/src/reg-lib/cpu/_reg_localTrans.cpp
RNiftyReg/src/reg-lib/cpu/_reg_lncc.h
RNiftyReg/src/reg-lib/cpu/_reg_thinPlateSpline.cpp
RNiftyReg/src/reg-lib/cpu/_reg_femTrans.h
RNiftyReg/src/reg-lib/cpu/_reg_lncc.cpp
RNiftyReg/src/reg-lib/cpu/_reg_optimiser.cpp
RNiftyReg/src/reg-lib/cpu/_reg_dti.cpp
RNiftyReg/src/reg-lib/cpu/_reg_nmi.cpp
RNiftyReg/src/reg-lib/Content.h
RNiftyReg/src/reg-lib/_reg_f3d2.cpp
RNiftyReg/src/reg-lib/_reg_polyAffine.cpp
RNiftyReg/src/reg-lib/_reg_base.cpp
RNiftyReg/src/reg-lib/_reg_f3d2.h
RNiftyReg/src/reg-lib/_reg_aladin.h
RNiftyReg/src/reg-lib/_reg_aladin_sym.h
RNiftyReg/src/reg-lib/_reg_f3d_sym.cpp
RNiftyReg/src/reg-lib/OptimiseKernel.h
RNiftyReg/src/reg-lib/_reg_polyAffine.h
RNiftyReg/src/reg-lib/_reg_base.h
RNiftyReg/src/reg-lib/BlockMatchingKernel.h
RNiftyReg/src/reg-lib/Platform.cpp
RNiftyReg/src/reg-lib/ResampleImageKernel.h
RNiftyReg/src/reg-lib/_reg_f3d_sym.h
RNiftyReg/src/reg-lib/Platform.h
RNiftyReg/src/reg-lib/ConvolutionKernel.h
RNiftyReg/src/reg-lib/_reg_f3d.cpp
RNiftyReg/src/reg-lib/Content.cpp
RNiftyReg/src/reg-lib/_reg_f3d.h
RNiftyReg/src/reg-lib/Kernel.h
RNiftyReg/src/reg-lib/KernelFactory.h
RNiftyReg/src/config.h
RNiftyReg/src/AffineMatrix.h
RNiftyReg/src/DeformationField.h
RNiftyReg/src/main.cpp
RNiftyReg/src/f3d.h
RNiftyReg/src/aladin.h
RNiftyReg/src/AffineMatrix.cpp
RNiftyReg/src/f3d.cpp
RNiftyReg/NAMESPACE
RNiftyReg/NEWS
RNiftyReg/R
RNiftyReg/R/affine.R RNiftyReg/R/niftyreg.R RNiftyReg/R/nifti.R RNiftyReg/R/image.R RNiftyReg/R/transform.R RNiftyReg/R/zzz.R
RNiftyReg/README.md
RNiftyReg/MD5
RNiftyReg/DESCRIPTION
RNiftyReg/man
RNiftyReg/man/applyTransform.Rd RNiftyReg/man/composeTransforms.Rd RNiftyReg/man/forward.Rd RNiftyReg/man/isImage.Rd RNiftyReg/man/deformationField.Rd RNiftyReg/man/decomposeAffine.Rd RNiftyReg/man/niftyreg.nonlinear.Rd RNiftyReg/man/readNifti.Rd RNiftyReg/man/writeAffine.Rd RNiftyReg/man/similarity.Rd RNiftyReg/man/jacobian.Rd RNiftyReg/man/halfTransform.Rd RNiftyReg/man/affine.Rd RNiftyReg/man/niftyreg.Rd RNiftyReg/man/reexports.Rd RNiftyReg/man/readAffine.Rd RNiftyReg/man/invertAffine.Rd RNiftyReg/man/niftyreg.linear.Rd RNiftyReg/man/buildAffine.Rd

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