RNiftyReg: Image Registration Using the 'NiftyReg' Library

Provides an 'R' interface to the 'NiftyReg' image registration tools <http://sourceforge.net/projects/niftyreg/>. Linear and nonlinear registration are supported, in two and three dimensions.

AuthorJon Clayden [cre, aut], Marc Modat [aut], Benoit Presles [aut], Thanasis Anthopoulos [aut], Pankaj Daga [aut]
Date of publication2017-02-04 08:53:09
MaintainerJon Clayden <code@clayden.org>
LicenseGPL-2
Version2.5.0
https://github.com/jonclayden/RNiftyReg

View on CRAN

Functions

affine Man page
applyTransform Man page
asAffine Man page
as.array.niftyreg Man page
buildAffine Man page
composeTransforms Man page
decomposeAffine Man page
deformationField Man page
dumpNifti Man page
forward Man page
forward.niftyreg Man page
halfTransform Man page
invertAffine Man page
isAffine Man page
isImage Man page
jacobian Man page
ndim Man page
niftyreg Man page
niftyreg.linear Man page
niftyreg.nonlinear Man page
pixdim Man page
pixdim<- Man page
pixunits Man page
pixunits<- Man page
print.affine Man page
qform<- Man page
readAffine Man page
readNifti Man page
reexports Man page
retrieveNifti Man page
reverse Man page
reverse.niftyreg Man page
sform<- Man page
similarity Man page
updateNifti Man page
voxelToWorld Man page
worldToVoxel Man page
writeAffine Man page
writeNifti Man page
xform Man page

Files

RNiftyReg
RNiftyReg/inst
RNiftyReg/inst/extdata
RNiftyReg/inst/extdata/flash_t1.nii.gz
RNiftyReg/inst/extdata/mni_brain.nii.gz
RNiftyReg/inst/extdata/house_colour_large.jpg
RNiftyReg/inst/extdata/control.nii.gz
RNiftyReg/inst/extdata/house_colour.png
RNiftyReg/inst/extdata/affine.txt
RNiftyReg/inst/extdata/epi_t2.nii.gz
RNiftyReg/inst/extdata/house.png
RNiftyReg/tests
RNiftyReg/tests/testthat
RNiftyReg/tests/testthat/test-15-affine.R
RNiftyReg/tests/testthat/test-20-niftyreg.R
RNiftyReg/tests/testthat/flirt.mat
RNiftyReg/tests/testthat/test-25-transform.R
RNiftyReg/tests/testthat/test-30-multireg.R
RNiftyReg/tests/test-all.R
RNiftyReg/src
RNiftyReg/src/Makevars
RNiftyReg/src/DeformationField.cpp
RNiftyReg/src/RNifti.cpp
RNiftyReg/src/aladin.cpp
RNiftyReg/src/reg-lib
RNiftyReg/src/reg-lib/Kernels.h
RNiftyReg/src/reg-lib/_reg_aladin_sym.cpp
RNiftyReg/src/reg-lib/AffineDeformationFieldKernel.h
RNiftyReg/src/reg-lib/_reg_aladin.cpp
RNiftyReg/src/reg-lib/cpu
RNiftyReg/src/reg-lib/cpu/_reg_macros.h
RNiftyReg/src/reg-lib/cpu/_reg_localTrans_jac.cpp
RNiftyReg/src/reg-lib/cpu/_reg_globalTrans.cpp
RNiftyReg/src/reg-lib/cpu/_reg_nmi.h
RNiftyReg/src/reg-lib/cpu/_reg_localTrans_jac.h
RNiftyReg/src/reg-lib/cpu/CPUBlockMatchingKernel.h
RNiftyReg/src/reg-lib/cpu/CPUResampleImageKernel.h
RNiftyReg/src/reg-lib/cpu/CPUAffineDeformationFieldKernel.cpp
RNiftyReg/src/reg-lib/cpu/CPUConvolutionKernel.h
RNiftyReg/src/reg-lib/cpu/_reg_blockMatching.h
RNiftyReg/src/reg-lib/cpu/CPUOptimiseKernel.h
RNiftyReg/src/reg-lib/cpu/_reg_tools.cpp
RNiftyReg/src/reg-lib/cpu/CPUBlockMatchingKernel.cpp
RNiftyReg/src/reg-lib/cpu/_reg_maths.h
RNiftyReg/src/reg-lib/cpu/_reg_localTrans_jacobian.cpp
RNiftyReg/src/reg-lib/cpu/_reg_localTrans.h
RNiftyReg/src/reg-lib/cpu/_reg_globalTrans.h
RNiftyReg/src/reg-lib/cpu/_reg_resampling.cpp
RNiftyReg/src/reg-lib/cpu/_reg_measure.h
RNiftyReg/src/reg-lib/cpu/CPUOptimiseKernel.cpp
RNiftyReg/src/reg-lib/cpu/_reg_optimiser.h
RNiftyReg/src/reg-lib/cpu/CPUKernelFactory.h
RNiftyReg/src/reg-lib/cpu/CPUKernelFactory.cpp
RNiftyReg/src/reg-lib/cpu/CPUConvolutionKernel.cpp
RNiftyReg/src/reg-lib/cpu/_reg_localTrans_regularisation.cpp
RNiftyReg/src/reg-lib/cpu/_reg_maths.cpp
RNiftyReg/src/reg-lib/cpu/CPUAffineDeformationFieldKernel.h
RNiftyReg/src/reg-lib/cpu/_reg_tools.h
RNiftyReg/src/reg-lib/cpu/_reg_resampling.h
RNiftyReg/src/reg-lib/cpu/_reg_blockMatching.cpp
RNiftyReg/src/reg-lib/cpu/CPUResampleImageKernel.cpp
RNiftyReg/src/reg-lib/cpu/_reg_localTrans.cpp
RNiftyReg/src/reg-lib/cpu/_reg_maths_eigen.h
RNiftyReg/src/reg-lib/cpu/_reg_localTrans_regul.h
RNiftyReg/src/reg-lib/cpu/_reg_maths_eigen.cpp
RNiftyReg/src/reg-lib/cpu/_reg_optimiser.cpp
RNiftyReg/src/reg-lib/cpu/_reg_splineBasis.cpp
RNiftyReg/src/reg-lib/cpu/_reg_splineBasis.h
RNiftyReg/src/reg-lib/cpu/_reg_localTrans_regul.cpp
RNiftyReg/src/reg-lib/cpu/_reg_nmi.cpp
RNiftyReg/src/reg-lib/_reg_f3d2.cpp
RNiftyReg/src/reg-lib/_reg_base.cpp
RNiftyReg/src/reg-lib/_reg_f3d2.h
RNiftyReg/src/reg-lib/_reg_aladin.h
RNiftyReg/src/reg-lib/_reg_aladin_sym.h
RNiftyReg/src/reg-lib/_reg_f3d_sym.cpp
RNiftyReg/src/reg-lib/OptimiseKernel.h
RNiftyReg/src/reg-lib/_reg_base.h
RNiftyReg/src/reg-lib/AladinContent.cpp
RNiftyReg/src/reg-lib/BlockMatchingKernel.h
RNiftyReg/src/reg-lib/AladinContent.h
RNiftyReg/src/reg-lib/Platform.cpp
RNiftyReg/src/reg-lib/ResampleImageKernel.h
RNiftyReg/src/reg-lib/_reg_f3d_sym.h
RNiftyReg/src/reg-lib/Platform.h
RNiftyReg/src/reg-lib/ConvolutionKernel.h
RNiftyReg/src/reg-lib/_reg_f3d.cpp
RNiftyReg/src/reg-lib/_reg_f3d.h
RNiftyReg/src/reg-lib/Kernel.h
RNiftyReg/src/reg-lib/KernelFactory.h
RNiftyReg/src/config.h
RNiftyReg/src/AffineMatrix.h
RNiftyReg/src/DeformationField.h
RNiftyReg/src/main.cpp
RNiftyReg/src/nifti1_io.h
RNiftyReg/src/f3d.h
RNiftyReg/src/aladin.h
RNiftyReg/src/AffineMatrix.cpp
RNiftyReg/src/f3d.cpp
RNiftyReg/NAMESPACE
RNiftyReg/NEWS
RNiftyReg/R
RNiftyReg/R/affine.R RNiftyReg/R/niftyreg.R RNiftyReg/R/nifti.R RNiftyReg/R/image.R RNiftyReg/R/transform.R RNiftyReg/R/zzz.R
RNiftyReg/README.md
RNiftyReg/MD5
RNiftyReg/DESCRIPTION
RNiftyReg/man
RNiftyReg/man/applyTransform.Rd RNiftyReg/man/composeTransforms.Rd RNiftyReg/man/forward.Rd RNiftyReg/man/isImage.Rd RNiftyReg/man/deformationField.Rd RNiftyReg/man/decomposeAffine.Rd RNiftyReg/man/niftyreg.nonlinear.Rd RNiftyReg/man/readNifti.Rd RNiftyReg/man/writeAffine.Rd RNiftyReg/man/similarity.Rd RNiftyReg/man/jacobian.Rd RNiftyReg/man/halfTransform.Rd RNiftyReg/man/affine.Rd RNiftyReg/man/niftyreg.Rd RNiftyReg/man/reexports.Rd RNiftyReg/man/readAffine.Rd RNiftyReg/man/invertAffine.Rd RNiftyReg/man/niftyreg.linear.Rd RNiftyReg/man/buildAffine.Rd

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