RSPS: RNA-Seq Power Simulation

Provides functions for estimating power or sample size for RNA-Seq studies. Empirical approach is used and the data is assumed to be count in nature. The underlying distribution of data is assumed to be Poisson or negative binomial. The package contains 6 function; 4 functions provide estimates of sample size or power for Poisson and Negative Binomial distribution; 2 functions provide plots of power for given sample size or sample size for given power.

Author
Milan Bimali, Joseph Usset, Brooke L. Fridley
Date of publication
2015-05-29 08:40:48
Maintainer
Milan Bimali <mbimali@kumc.edu>
License
GPL-2
Version
1.0

View on CRAN

Man pages

negbin.pow
Estimates power for given sample size using simulation from...
negbin.samp
Estimates sample sizes for desired power using simulation...
poiss.pow
Estimates power for given sample size using simulation from...
poiss.samp
Estimates sample sizes for desired power using simulation...
power.plot
Provides plot of Estimated Power vs Sample Size
RSPS-package
Provides estimates of power or sample size using empirical...
sample.plot
Provides plot of Estimated sample size vs power

Files in this package

RSPS
RSPS/NAMESPACE
RSPS/R
RSPS/R/negbin.samp.R
RSPS/R/negbin.pow.R
RSPS/R/poiss.pow.R
RSPS/R/power.plot.R
RSPS/R/sample.plot.R
RSPS/R/poiss.samp.R
RSPS/MD5
RSPS/DESCRIPTION
RSPS/man
RSPS/man/RSPS-package.Rd
RSPS/man/sample.plot.Rd
RSPS/man/negbin.samp.Rd
RSPS/man/poiss.pow.Rd
RSPS/man/negbin.pow.Rd
RSPS/man/poiss.samp.Rd
RSPS/man/power.plot.Rd