RVsharing: Probability of Sharing Rare Variants among Relatives

Computes estimates of the probability of related individuals sharing a rare variant.

Author
Alexandre Bureau, Ingo Ruczinski, Samuel G. Younkin
Date of publication
2016-06-17 08:18:27
Maintainer
Alexandre Bureau <alexandre.bureau@msp.ulaval.ca>
License
GPL-2
Version
1.6.0

View on CRAN

Man pages

compute.kinship.prop.coef
Ratio of excess kinship among descendants over mean kinship...
ex.ped.mat
Example genotype data
GeneDrop
Gene Dropping method
GeneDropSim.allsubsets.fn
Estimation of the probability of sharing of a rare variant by...
GeneDropSimExcessSharing.fn
Estimation of the probability of sharing of a rare variant by...
GeneDropSim.fn
Estimation of the probability of sharing of a rare variant by...
get.psubset
Probability of sharing of rare variants in a subset of...
ped2trio
Conversion of a 'pedigree' object into a list of trio objects
ped.list
Example pedigrees
RVgene
Probability of sharing of rare variants in a family sample...
RVsharing
Probability of sharing a rare variant among relatives
Trio
Trio Class

Files in this package

RVsharing
RVsharing/NAMESPACE
RVsharing/data
RVsharing/data/ped.list.RData
RVsharing/data/ex.ped.mat.RData
RVsharing/R
RVsharing/R/AllClasses.R
RVsharing/R/AllGenerics.R
RVsharing/R/extract_carriers.R
RVsharing/R/approx2_functions.R
RVsharing/R/ped2trio.R
RVsharing/R/RVsharing.fn.R
RVsharing/R/functions.R
RVsharing/R/methods-RVsharingProb.R
RVsharing/R/pvalue_functions.R
RVsharing/R/methods-pedigree.R
RVsharing/R/PFU.R
RVsharing/R/methods-trio.R
RVsharing/R/zzz.R
RVsharing/R/RVgene.R
RVsharing/MD5
RVsharing/DESCRIPTION
RVsharing/man
RVsharing/man/ped.list.Rd
RVsharing/man/GeneDropSim.fn.Rd
RVsharing/man/get.psubset.Rd
RVsharing/man/RVsharingProb.rd
RVsharing/man/Trio.Rd
RVsharing/man/GeneDropSimExcessSharing.fn.Rd
RVsharing/man/GeneDrop.Rd
RVsharing/man/GeneDropSim.allsubsets.fn.Rd
RVsharing/man/RVsharing.Rd
RVsharing/man/ped2trio.Rd
RVsharing/man/ex.ped.mat.Rd
RVsharing/man/RVgene.Rd
RVsharing/man/compute.kinship.prop.coef.Rd