agSequences: Getting and setting antigen sequence information

In Racmacs: Antigenic Cartography Macros

Getting and setting antigen sequence information

Description

Getting and setting antigen sequence information

Usage

agSequences(map, missing_value = ".")

agSequences(map) <- value

agNucleotideSequences(map, missing_value = ".")

agNucleotideSequences(map) <- value

Arguments

map	The acmap data object
missing_value	Character to use to fill in portions of the sequence matrix where sequence data is missing.
value	A character matrix of sequences with rows equal to the number of antigens

Value

A character matrix of sequences, where each row represents an antigen.

See Also

Other antigen and sera attribute functions: agAttributes, agGroups(), agHomologousSr(), agLabIDs(), ptAnnotations, ptClades, srAttributes, srGroups(), srHomologousAgs(), srSequences()

Racmacs documentation built on June 22, 2024, 11:33 a.m.