mapResiduals: Get a table of residuals from an acmap

In Racmacs: Antigenic Cartography Macros

Get a table of residuals from an acmap

Description

This is the difference between the table distance and the map distance

Usage

mapResiduals(map, exclude_nd = FALSE, optimization_number = 1)

Arguments

map	The acmap object
exclude_nd	Should values associated with non-detectable measurements like <10 be set to NA
optimization_number	The optimization number

Value

Returns a matrix of residuals, showing the residual error between map distance and table distance for each antigen-sera pair.

See Also

Other map diagnostic functions: agCohesion(), bootstrapBlobs(), bootstrapMap(), checkHemisphering(), dimensionTestMap(), logtiterTable(), map-table-distances, mapBootstrapCoords, mapDistances(), mapRelaxed(), pointStress, ptBootstrapBlob, ptBootstrapCoords(), ptLeverage, ptTriangulationBlob, recalculateStress(), stressTable(), tableColbases(), tableDistances(), triangulationBlobs(), unstableMaps

Other functions relating to map stress calculation: logtiterTable(), mapDistances(), pointStress, recalculateStress(), stressTable(), tableColbases(), tableDistances()

Racmacs documentation built on June 22, 2024, 11:33 a.m.