CNAchrom11: DNA copy number alteration data in array-based CGH data for...

In Rbeast: Bayesian Change-Point Detection and Time Series Decomposition

DNA copy number alteration data in array-based CGH data for Chromesome 11

Description

CNAchrom11 is a vector of the log2 intensity ratios for cell line GM03576 for Chromosome 11, obtained from Snijders et al. (2001).

Usage

    data(CNAchrom11)

Source

Snijders et al. (2001), Assembly of microarrays for genome-wide measurement of DNA copy number, Nature Genetics, 29, 263-264 (http://www.nature.com/ng/journal/v29/n3/full/ng754.html).

References

1. Zhao, K., Wulder, M.A., Hu, T., Bright, R., Wu, Q., Qin, H., Li, Y., Toman, E., Mallick, B., Zhang, X. and Brown, M., 2019. Detecting change-point, trend, and seasonality in satellite time series data to track abrupt changes and nonlinear dynamics: A Bayesian ensemble algorithm. Remote Sensing of Environment, 232, p.111181 (the beast algorithm paper).

2. Zhao, K., Valle, D., Popescu, S., Zhang, X. and Mallick, B., 2013. Hyperspectral remote sensing of plant biochemistry using Bayesian model averaging with variable and band selection. Remote Sensing of Environment, 132, pp.102-119 (the Bayesian MCMC scheme used in beast).

3. Hu, T., Toman, E.M., Chen, G., Shao, G., Zhou, Y., Li, Y., Zhao, K. and Feng, Y., 2021. Mapping fine-scale human disturbances in a working landscape with Landsat time series on Google Earth Engine. ISPRS Journal of Photogrammetry and Remote Sensing, 176, pp.250-261(a beast application paper).

Examples

 library(Rbeast)
 data(CNAchrom11)  
 
 
 o = beast(CNAchrom11, season='none') # no periodic component
 plot(o)
 
 

Rbeast documentation built on Sept. 12, 2024, 7:36 a.m.