parse_gtdb: Parse GTDB format labels (wrapper for...
In Rclade: Automated Deep-Time Phylogenetic Tree Collapsing and Visualization
View source: R/parse-taxonomy.R
parse_gtdb R Documentation
Parse GTDB format labels (wrapper for parse_semicolon_delimited)
Description
Parse GTDB format labels (wrapper for parse_semicolon_delimited)
Usage
parse_gtdb(labels, levels = NULL, sep = ";")
Arguments
labels
Character vector of tip labels
levels
List with codes and names vectors.
sep
Character. Separator between taxonomy ranks. Default: ";".
Value
data.frame with taxonomy columns
Rclade documentation built on Sept. 26, 2026, 5:07 p.m.
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View source: R/parse-taxonomy.R
| parse_gtdb | R Documentation |
Parse GTDB format labels (wrapper for parse_semicolon_delimited)
Description
Parse GTDB format labels (wrapper for parse_semicolon_delimited)
Usage
parse_gtdb(labels, levels = NULL, sep = ";")
Arguments
labels |
Character vector of tip labels |
levels |
List with codes and names vectors. |
sep |
Character. Separator between taxonomy ranks. Default: |
Value
data.frame with taxonomy columns
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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