parse_semicolon_delimited: Parse Format B: Semicolon-delimited taxonomy (GTDB-style)
In Rclade: Automated Deep-Time Phylogenetic Tree Collapsing and Visualization
View source: R/parse-taxonomy.R
parse_semicolon_delimited R Documentation
Parse Format B: Semicolon-delimited taxonomy (GTDB-style)
Description
Parses labels like d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;...
where empty values like s__ are parsed as NA.
Usage
parse_semicolon_delimited(labels, levels = NULL, sep = ";")
Arguments
labels
Character vector of tip labels
levels
List with codes and names vectors for taxonomy levels.
sep
Character. Separator between taxonomy ranks. Default: ";".
Value
data.frame with taxonomy columns
Rclade documentation built on Sept. 26, 2026, 5:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/parse-taxonomy.R
| parse_semicolon_delimited | R Documentation |
Parse Format B: Semicolon-delimited taxonomy (GTDB-style)
Description
Parses labels like d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;...
where empty values like s__ are parsed as NA.
Usage
parse_semicolon_delimited(labels, levels = NULL, sep = ";")
Arguments
labels |
Character vector of tip labels |
levels |
List with codes and names vectors for taxonomy levels. |
sep |
Character. Separator between taxonomy ranks. Default: |
Value
data.frame with taxonomy columns
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.