theme_timetree: Publication-ready theme for timetree plots
In Rclade: Automated Deep-Time Phylogenetic Tree Collapsing and Visualization
View source: R/theme-publication.R
theme_timetree R Documentation
Publication-ready theme for timetree plots
Description
Based on ggtree::theme_tree2(), customized for publication quality.
Includes coord_cartesian(clip = "off") to prevent collapsed clade
triangles from being clipped at the plot panel boundary — triangle vertices
(especially the MRCA node apex) often extend beyond the tip-based y-axis range.
Usage
theme_timetree(base_size = 12)
Arguments
base_size
Base font size
Value
A list with components theme (ggplot2 theme) and
coord (coord_cartesian(clip = "off")). Callers should apply
both via p + result$theme + result$coord.
Rclade documentation built on Sept. 26, 2026, 5:07 p.m.
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View source: R/theme-publication.R
| theme_timetree | R Documentation |
Publication-ready theme for timetree plots
Description
Based on ggtree::theme_tree2(), customized for publication quality.
Includes coord_cartesian(clip = "off") to prevent collapsed clade
triangles from being clipped at the plot panel boundary — triangle vertices
(especially the MRCA node apex) often extend beyond the tip-based y-axis range.
Usage
theme_timetree(base_size = 12)
Arguments
base_size |
Base font size |
Value
A list with components theme (ggplot2 theme) and
coord (coord_cartesian(clip = "off")). Callers should apply
both via p + result$theme + result$coord.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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