countItemsSampleGUI: GUI to manually count the number of cells in colonies

In RclusTool: Graphical Toolbox for Clustering and Classification of Data Frames

GUI to manually count the number of cells in colonies

Description

Open a Graphical User Interface allowing to choose the images directory, to count manually the number of cells in colonies and to build specific predictive model.

Usage

countItemsSampleGUI(data.sample, RclusTool.env = initParameters())

Arguments

data.sample	list containing features, profiles and clustering results.
RclusTool.env	environment in which all global parameters, raw data and results are stored.

Details

countItemsSampleGUI opens a Graphical User Interface allowing to choose the images directory, to count manually the number of cells in colonies and to build specific predictive model

Value

RDS file containing the counts.

Examples

 
dat <- rbind(matrix(rnorm(100, mean = 0, sd = 0.3), ncol = 2), 
             matrix(rnorm(100, mean = 2, sd = 0.3), ncol = 2), 
             matrix(rnorm(100, mean = 4, sd = 0.3), ncol = 2))
tf <- tempfile()
write.table(dat, tf, sep=",", dec=".")
x <- importSample(file.features=tf)

x <- computeUnSupervised(x, K=0, pca=TRUE, echo=TRUE)
countResult <- countItemsSampleGUI(x)

RclusTool documentation built on Aug. 29, 2022, 9:07 a.m.