| .ancestry_aligned_query |
Source code
|
| .ancestry_audit_query |
Source code
|
| .ancestry_bounded_proportions |
Source code
|
| .ancestry_check_site_contract |
Source code
|
| .ancestry_chromosome_key |
Source code
|
| .ancestry_classification_query |
Source code
|
| .ancestry_consecutive_pcs |
Source code
|
| .ancestry_duplicate_keys |
Source code
|
| .ancestry_indexed_audit_query |
Source code
|
| .ancestry_integer_type |
Source code
|
| .ancestry_long_adapter |
Source code
|
| .ancestry_long_contract |
Source code
|
| .ancestry_moments_query |
Source code
|
| .ancestry_prediction_query |
Source code
|
| .ancestry_profile_stage |
Source code
|
| .ancestry_solver_expression |
Source code
|
| .ancestry_wide_query |
Source code
|
| .build_hts_arm |
Source code
|
| .depth_number |
Source code
|
| .depth_number_list |
Source code
|
| .depth_state_query |
Source code
|
| .duckhts_check_table_target |
Source code
|
| .duckhts_create_table |
Source code
|
| .duckhts_geno_query |
Source code
|
| .duckhts_regions_expression |
Source code
|
| .expand_hts_files |
Source code
|
| .format_hts_param |
Source code
|
| .geno_sites_scratch_name |
Source code
|
| .geno_sites_source_sql |
Source code
|
| .hts_multi_read |
Source code
|
| .roh_frequency_source |
Source code
|
| .roh_limit_arguments |
Source code
|
| .roh_number |
Source code
|
| .roh_validated_options |
Source code
|
| .simd_backend_arg |
Source code
|
| .somalier_bounded_whole_number |
Source code
|
| .somalier_drop_view |
Source code
|
| .somalier_find_sites_field |
Source code
|
| .somalier_find_sites_query |
Source code
|
| .somalier_fraction |
Source code
|
| .somalier_half_open_fraction |
Source code
|
| .somalier_nonnegative_number |
Source code
|
| .somalier_open_fraction |
Source code
|
| .somalier_positive_number |
Source code
|
| .somalier_publish_query |
Source code
|
| .somalier_quote_number |
Source code
|
| .somalier_scalar_text |
Source code
|
| .somalier_select_samples |
Source code
|
| .somalier_source |
Source code
|
| .somalier_temp_view_name |
Source code
|
| .somalier_validate_name |
Source code
|
| .somalier_validate_output |
Source code
|
| .somalier_validate_sample_ids |
Source code
|
| .somalier_whole_number |
Source code
|
| .validate_nonnegative_integer_param |
Source code
|
| .validate_scan_mode_param |
Source code
|
| Rduckhts |
Man page
|
| Rduckhts-package |
Man page
|
| build_param_str |
Source code
|
| convert_parquet_common_params |
Source code
|
| detect_complex_types |
Man page
Source code
|
| duckdb_path_exists |
Source code
|
| duckdb_type_mappings |
Man page
Source code
|
| duckhts_append_extension_metadata |
Source code
|
| duckhts_bootstrap |
Man page
Source code
|
| duckhts_build |
Man page
Source code
|
| duckhts_extension_dir |
Source code
|
| duckhts_htslib_plugins_dir |
Source code
|
| duckhts_load |
Man page
Source code
|
| duckhts_read_source_manifest |
Source code
|
| duckhts_runtime_htslib_info |
Source code
|
| duckhts_source_manifest |
Source code
|
| extract_array_element |
Man page
Source code
|
| extract_map_data |
Man page
Source code
|
| normalize_tabix_types |
Man page
Source code
|
| rduckhts_ancestry_bam |
Man page
Source code
|
| rduckhts_ancestry_geno |
Man page
Source code
|
| rduckhts_ancestry_panel |
Man page
Source code
|
| rduckhts_ancestry_proportions |
Man page
Source code
|
| rduckhts_bam |
Man page
Source code
|
| rduckhts_bam_bed_coverage |
Man page
Source code
|
| rduckhts_bam_bin_counts |
Man page
Source code
|
| rduckhts_bam_convert_parquet |
Man page
Source code
|
| rduckhts_bam_index |
Man page
Source code
|
| rduckhts_bam_insert_size_counts |
Man page
Source code
|
| rduckhts_bam_insert_size_counts_sql |
Man page
Source code
|
| rduckhts_bam_mate_overlap_counts |
Man page
Source code
|
| rduckhts_bam_mismatch_counts |
Man page
Source code
|
| rduckhts_bam_multi |
Man page
Source code
|
| rduckhts_bcf |
Man page
Source code
|
| rduckhts_bcf_convert_parquet |
Man page
Source code
|
| rduckhts_bcf_index |
Man page
Source code
|
| rduckhts_bcf_multi |
Man page
Source code
|
| rduckhts_bcf_samples |
Man page
Source code
|
| rduckhts_bcftools_norm |
Man page
Source code
|
| rduckhts_bed |
Man page
Source code
|
| rduckhts_bed_multi |
Man page
Source code
|
| rduckhts_bgunzip |
Man page
Source code
|
| rduckhts_bgzip |
Man page
Source code
|
| rduckhts_bigwig |
Man page
Source code
|
| rduckhts_connect |
Man page
Source code
|
| rduckhts_count_error_fit |
Man page
Source code
|
| rduckhts_count_mixture_lowpass |
Man page
Source code
|
| rduckhts_depth_bins |
Man page
Source code
|
| rduckhts_depth_region_fraction |
Man page
Source code
|
| rduckhts_depth_sex_fraction |
Man page
Source code
|
| rduckhts_depth_state_segments |
Man page
Source code
|
| rduckhts_depth_state_solutions |
Man page
Source code
|
| rduckhts_detect_quality_encoding |
Man page
Source code
|
| rduckhts_fasta |
Man page
Source code
|
| rduckhts_fasta_index |
Man page
Source code
|
| rduckhts_fasta_multi |
Man page
Source code
|
| rduckhts_fasta_nuc |
Man page
Source code
|
| rduckhts_fastq |
Man page
Source code
|
| rduckhts_fastq_multi |
Man page
Source code
|
| rduckhts_functions |
Man page
Source code
|
| rduckhts_genbank |
Man page
Source code
|
| rduckhts_genbank_to_fasta |
Man page
Source code
|
| rduckhts_geno |
Man page
Source code
|
| rduckhts_geno_sites |
Man page
Source code
|
| rduckhts_gff |
Man page
Source code
|
| rduckhts_gff_convert_parquet |
Man page
Source code
|
| rduckhts_gff_multi |
Man page
Source code
|
| rduckhts_gtf |
Man page
Source code
|
| rduckhts_gtf_multi |
Man page
Source code
|
| rduckhts_hts_header |
Man page
Source code
|
| rduckhts_hts_index |
Man page
Source code
|
| rduckhts_hts_index_raw |
Man page
Source code
|
| rduckhts_hts_index_spans |
Man page
Source code
|
| rduckhts_htslib_config |
Man page
Source code
|
| rduckhts_htslib_info |
Man page
Source code
|
| rduckhts_htslib_version |
Man page
Source code
|
| rduckhts_install_macros |
Man page
Source code
|
| rduckhts_liftover |
Man page
Source code
|
| rduckhts_load |
Man page
Source code
|
| rduckhts_mosdepth |
Man page
Source code
|
| rduckhts_munge |
Man page
Source code
|
| rduckhts_pileup |
Man page
Source code
|
| rduckhts_roh |
Man page
Source code
|
| rduckhts_roh_counts |
Man page
Source code
|
| rduckhts_samtools_idxstats |
Man page
Source code
|
| rduckhts_score |
Man page
Source code
|
| rduckhts_simd_backend |
Man page
Source code
|
| rduckhts_simd_backend_available |
Man page
Source code
|
| rduckhts_simd_backend_compiled |
Man page
Source code
|
| rduckhts_simd_backend_cpu_supported |
Man page
Source code
|
| rduckhts_simd_info |
Man page
Source code
|
| rduckhts_simd_kernel_info |
Man page
Source code
|
| rduckhts_simd_requested_backend |
Man page
Source code
|
| rduckhts_simd_set_backend |
Man page
Source code
|
| rduckhts_somalier_bam_counts |
Man page
Source code
|
| rduckhts_somalier_charr |
Man page
Source code
|
| rduckhts_somalier_find_sites |
Man page
Source code
|
| rduckhts_somalier_import_sites |
Man page
Source code
|
| rduckhts_somalier_matched_contamination |
Man page
Source code
|
| rduckhts_somalier_relatedness |
Man page
Source code
|
| rduckhts_somalier_sex |
Man page
Source code
|
| rduckhts_somalier_sketches |
Man page
Source code
|
| rduckhts_somalier_vcf_counts |
Man page
Source code
|
| rduckhts_tabix |
Man page
Source code
|
| rduckhts_tabix_convert_parquet |
Man page
Source code
|
| rduckhts_tabix_index |
Man page
Source code
|
| rduckhts_tabix_multi |
Man page
Source code
|
| read_munge_column_map_file |
Source code
|
| read_munge_preset_map |
Source code
|
| resolve_munge_column_map |
Source code
|
| run_convert_parquet_sql |
Source code
|
| setup_hts_env |
Man page
Source code
|
| sql_map_literal |
Source code
|
| sql_quote_identifier |
Source code
|
| sql_quote_string |
Source code
|
| sql_raw_expression |
Source code
|
| sql_varchar_list_literal |
Source code
|
| sql_whole_number |
Source code
|
