rduckhts_bam_index: Build BAM or CRAM Index

In Rduckhts: 'DuckDB' High Throughput Sequencing File Formats Reader Extension

Build BAM or CRAM Index

Description

Builds a BAM or CRAM index using the DuckHTS extension.

Usage

rduckhts_bam_index(con, path, index_path = NULL, min_shift = 0, threads = 4)

Arguments

con	A DuckDB connection with DuckHTS loaded
path	Path to the input BAM or CRAM file
index_path	Optional explicit output path for the created index
min_shift	Index format selector used by htslib
threads	htslib indexing thread count

Value

A data frame with 'success', 'index_path', and 'index_format'

Rduckhts documentation built on Oct. 25, 2026, 1:08 a.m.