Man pages for RefFreeEWAS
EWAS using Reference-Free DNA Methylation Mixture Deconvolution

BootOneRefFreeEwasModelOne Bootstrap sample for Reference-Free EWAS Model
BootRefFreeEwasModelBootstrap for Reference-Free EWAS Model
bootstrapPairsOne Bootstrap Sample for Pairs
deviance.RefFreeCellMixdeviance.RefFreeCellMix
EstDimICDimension estimation by AIC and BIC
omnibusBootBootstrap-based omnibus test of significance across all...
PairsBootOneRefFreeEwasModelOne Bootstrap Sample for Reference-Free EWAS Model,...
PairsBootRefFreeEwasModelBootstrap for Reference-Free EWAS Model, Accounting for...
print.BootRefFreeEwasModelprint.BootRefFreeEwasModel
print.RefFreeCellMixprint.RefFreeCellMix
print.RefFreeEwasModelprint.RefFreeEwasModel
print.summaryBootRefFreeEwasModelprint.summaryBootRefFreeEwasModel
projectMixCell Mixture Projection (reference-based)
RefFreeCellMixReference-Free Cell Mixture Projection
RefFreeCellMixArrayInitialize Reference-Free Cell Mixture Projection
RefFreeCellMixArrayDevianceBootRefFreeCellMixArrayDevianceBoot
RefFreeCellMixArrayDevianceBootsRefFreeCellMixArrayDevianceBoots
RefFreeCellMixInitializeInitialize Reference-Free Cell Mixture Projection
RefFreeEwasModelReference-Free EWAS Model
rfEwasExampleBetaValuesSimulated mixed-cell DNA methylation data set
rfEwasExampleCovariateSimulated covariate for mixed-cell DNA methylation data set
rfEwasExampleTRUEAlphaTrue alpha intercepts used in simulation
rfEwasExampleTRUEBetaTrue beta coefficients used in simulation (for comparison...
rfEwasExampleTRUEMethDMRTrue M matrix (cell-specific methylation values) used in...
rfEwasExampleTRUEOmegaTrue Omega (cell mixture) coefficients used in simulation...
summary.BootRefFreeEwasModelsummary.BootRefFreeEwasModel
summary.RefFreeCellMixsummary.RefFreeCellMix
svdSafeSafe SVD-like matrix decomposition
X.HNSCC.caseStatusAgeHNSCC Example - Covariates
Y.HNSCC.averageBetasHNSCC Example - DNA Methylation Average Betas
RefFreeEWAS documentation built on May 29, 2017, 3:24 p.m.