Description Usage Arguments Details
Matrix of bootstrapped deviances corresponding to an array of reference-free cell-mixture decompositions
1 | RefFreeCellMixArrayDevianceBoots(rfArray, Y, R=5, EPSILON=1E-9, bootstrapIterations=5)
|
rfArray |
list of RefFreeCellMix objects (e.g. from RefFreeCellMixArray) |
Y |
Methylation matrix on which x was based |
R |
Number of bootstrapped vectors to return |
EPSILON |
Minimum value of variance (zero variances will be reset to this value) |
bootstrapIterations |
Number of RefFreeCellMix iterations to use in bootstrap |
Matrix (multiple vectors) of bootstrapped deviances corresponding to an array of reference-free cell-mixture decompositions,
used to determine optimal number of cell types. This function returns one bootstrapped vector.
The bootstrapped deviance is based on normal distribution applied to errors of Y after accounting for cell mixture effect, Mu Omega^T.
See RefFreeCellMixArray
for example.
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