stenv: Fit the simultaneous envelope model

Description Usage Arguments Details Value References Examples

View source: R/stenv.R

Description

Fit the simultaneous envelope model in multivariate linear regression with dimension (q, u).

Usage

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stenv(X, Y, q, u, asy = TRUE, Pinit = NULL, Ginit = NULL)

Arguments

X

Predictors. An n by p matrix, p is the number of predictors. The predictors can be univariate or multivariate, discrete or continuous.

Y

Multivariate responses. An n by r matrix, r is the number of responses and n is number of observations. The responses must be continuous variables.

q

Dimension of the X-envelope. An integer between 0 and p.

u

Dimension of the Y-envelope. An integer between 0 and r.

asy

Flag for computing the asymptotic variance of the envelope estimator. The default is TRUE. When p and r are large, computing the asymptotic variance can take much time and memory. If only the envelope estimators are needed, the flag can be set to asy = FALSE.

Pinit

The user-specified value of Phi for the X-envelope subspace. An p by q matrix. The default is the one generated by function stenvMU.

Ginit

The user-specified value of Gamma for the Y-envelope subspace. An r by u matrix. The default is the one generated by function stenvMU.

Details

This function fits the envelope model to the responses and predictors simultaneously,

Y = μ + Γη'Φ' X+\varepsilon, Σ_{Y|X}=ΓΩΓ'+Γ_{0}Ω_{0}Γ'_{0}, Σ_{X}=ΦΔΦ'+Φ_{0}Δ_{0}Φ'_{0}

using the maximum likelihood estimation. When the dimension of the Y-envelope is between 1 and r-1 and the dimension of the X-envelope is between 1 and p-1, the starting value and blockwise coordinate descent algorithm in Cook et al. (2016) is implemented. When the dimension is (p, r), then the envelope model degenerates to the standard multivariate linear regression. When the dimension of the Y-envelope is r, then the envelope model degenerates to the standard envelope model. When the dimension of X-envelope is p, then the envelope model degenerates to the envelope model in the predictor space. When the dimension is 0, it means that X and Y are uncorrelated, and the fitting is different.

Value

The output is a list that contains the following components:

beta

The envelope estimator of the regression coefficients.

SigmaYcX

The envelope estimator of the error covariance matrix.

SigmaX

The envelope estimator of the covariance matrix of X.

Gamma

An orthonormal basis of the Y-envelope subspace.

Gamma0

An orthonormal basis of the complement of the Y-envelope subspace.

eta

The coordinates of beta with respect to Gamma and Phi.

Omega

The coordinates of SigmaYcX with respect to Gamma.

Omega0

The coordinates of SigmaYcX with respect to Gamma0.

mu

The estimated intercept.

Phi

An orthonormal basis of the X-envelope subspace.

Phi0

An orthonormal basis of the complement of the X-envelope subspace.

Delta

The coordinates of SigmaX with respect to Phi.

Delta0

The coordinates of SigmaX with respect to Phi0.

loglik

The maximized log likelihood function.

covMatrix

The asymptotic covariance of vec(beta). The covariance matrix returned are asymptotic. For the actual standard errors, multiply by 1 / n.

asySE

The asymptotic standard error for elements in beta under the envelope model. The standard errors returned are asymptotic, for actual standard errors, multiply by 1 / sqrt(n).

ratio

The asymptotic standard error ratio of the standard multivariate linear regression estimator over the envelope estimator, for each element in beta.

n

The number of observations in the data.

References

Cook, R. D., Zhang, X. (2015). Simultaneous Envelopes for Multivariate Linear Regression. Technometrics 57, 11 - 25.

Cook, R. D., Forzani, L. and Su, Z. (2016) A Note on Fast Envelope Estimation. Journal of Multivariate Analysis. 150, 42-54.

Examples

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data(fiberpaper)
X <- fiberpaper[, 5:7]
Y <- fiberpaper[, 1:4]
u <- u.stenv(X, Y)
u

m <- stenv(X, Y, 2, 3)
m
m$beta

Renvlp documentation built on Feb. 28, 2019, 1:04 a.m.