gen.data: Example GenABEL data
In RepeatABEL: GWAS for Multiple Observations on Related Individuals
Description
Example GenABEL data
Usage
1
Examples
1
2
Example output
Loading required package: hglm
Loading required package: Matrix
Loading required package: MASS
Loading required package: hglm.data
Loading required package: sp
hglm: Hierarchical Generalized Linear Models
Version 2.2-1 (2019-04-04) installed
Authors: Moudud Alam, Lars Ronnegard, Xia Shen
Maintainer: Xia Shen <xia.shen@ki.se>
Use citation("hglm") to know how to cite our work.
Discussion: https://r-forge.r-project.org/forum/?group_id=558
BugReports: https://r-forge.r-project.org/tracker/?group_id=558
VideoTutorials: http://www.youtube.com/playlist?list=PLn1OmZECD-n15vnYzvJDy5GxjNpVV5Jr8
Loading required package: GenABEL
Loading required package: GenABEL.data
Chromosome Position Strand A1 A2 NoMeasured CallRate Q.2 P.11
rs1646456 1 653 + C G 100 1.00 0.31000000 46
rs4785242 1 1766 - T C 99 0.99 0.61111111 14
rs4435802 1 5291 + C A 100 1.00 0.08000000 84
rs2847446 1 5555 + T A 98 0.98 0.30102041 48
rs946364 1 8533 - T C 97 0.97 0.23711340 57
rs299251 1 10737 + A G 98 0.98 0.06632653 85
rs2456488 1 11779 + G C 100 1.00 0.35500000 42
rs1292700 1 12710 - A C 100 1.00 0.39000000 39
rs8183220 1 17110 - G A 98 0.98 0.05102041 89
rs1559539 1 18457 + G T 100 1.00 0.15000000 71
rs6599877 1 19833 + A T 99 0.99 0.23737374 58
rs175910 1 22311 - G T 98 0.98 0.21428571 62
rs1919938 1 22314 + T G 99 0.99 0.71717172 9
rs5370174 1 22450 + T A 99 0.99 0.11616162 78
rs4619550 1 25768 - G T 97 0.97 0.09793814 80
rs1116030 1 27044 + A G 99 0.99 0.08585859 82
rs934875 1 27739 + A T 99 0.99 0.13131313 74
rs7844309 1 31482 - C G 99 0.99 0.51010101 22
rs9604299 1 33575 + A T 99 0.99 0.09090909 81
rs6735432 1 34812 + C G 99 0.99 0.12121212 76
rs2968893 1 37507 + T C 98 0.98 0.07142857 84
rs9807290 1 42149 + G T 100 1.00 0.15000000 73
rs9218131 1 43942 - T A 99 0.99 0.06060606 87
rs2689086 1 47084 + G A 98 0.98 0.06632653 85
rs1517354 1 47682 - C A 98 0.98 0.69387755 6
rs5308242 1 49872 - T A 98 0.98 0.22448980 56
rs249927 1 51795 - T G 100 1.00 0.86000000 1
rs4961344 1 53176 + G T 100 1.00 0.10500000 80
rs7305258 1 53254 + A G 99 0.99 0.73737374 9
rs6770110 1 53651 - A G 100 1.00 0.27000000 56
rs8059824 1 53687 + A C 100 1.00 0.22000000 58
rs5889476 1 54374 - C A 99 0.99 0.13131313 75
rs3406206 1 55838 - T A 99 0.99 0.51010101 25
rs34949 1 56690 + C G 97 0.97 0.51030928 24
rs9395473 1 57803 + T A 100 1.00 0.49500000 26
rs1525102 1 58063 + A T 99 0.99 0.50505051 25
rs4602281 1 58779 - T G 98 0.98 0.47448980 26
rs2537006 1 59031 + G A 98 0.98 0.45918367 28
rs9740406 1 64799 + G T 96 0.96 0.51562500 20
rs5657810 1 66993 - C G 100 1.00 0.29500000 51
rs9080376 1 67292 - C T 99 0.99 0.08080808 84
rs1307787 1 68574 + G A 100 1.00 0.19500000 64
rs2939190 1 71843 - A G 99 0.99 0.20707071 61
rs1857718 1 73611 - T C 100 1.00 0.05000000 90
rs3304816 1 76637 + C A 99 0.99 0.67171717 10
rs6029233 1 77973 + A C 99 0.99 0.24242424 56
rs3856709 1 80141 - G T 100 1.00 0.05000000 90
rs8644749 1 81338 + C A 100 1.00 0.13500000 75
rs3926499 1 81517 - T G 99 0.99 0.14646465 73
rs989021 1 83865 + G A 98 0.98 0.11734694 77
rs5192323 1 85141 - C T 99 0.99 0.11111111 79
rs105659 1 85621 - T A 96 0.96 0.26041667 54
rs4234616 1 86544 - A T 100 1.00 0.09000000 82
rs5131126 1 86548 + G C 99 0.99 0.17171717 67
rs9174700 1 87184 - C A 99 0.99 0.11616162 78
rs8636328 1 89457 - G A 100 1.00 0.88500000 2
rs1506397 1 89472 + C G 100 1.00 0.88500000 2
rs7201791 1 89954 + G A 100 1.00 0.11500000 79
rs4300981 1 91620 + C T 98 0.98 0.88775510 2
rs8487702 1 92219 - G C 100 1.00 0.88500000 2
rs1149006 1 93356 - C T 99 0.99 0.11111111 79
rs1417620 1 94207 + G T 99 0.99 0.11616162 78
rs6544260 1 96214 - A T 99 0.99 0.84343434 3
rs6258447 1 100325 + G C 99 0.99 0.09595960 81
rs884310 1 101791 - T A 96 0.96 0.11979167 75
rs4084365 1 102483 + C T 100 1.00 0.13500000 76
rs6482496 1 106655 - T A 99 0.99 0.20202020 61
rs7962427 1 107065 + A G 96 0.96 0.11979167 75
rs4196655 1 109933 + A T 99 0.99 0.11616162 78
rs5604984 1 115500 - G T 100 1.00 0.13000000 76
rs3233253 1 115613 - T G 99 0.99 0.22727273 58
rs1357966 1 123162 + A G 100 1.00 0.21000000 60
rs278643 1 125911 + A C 97 0.97 0.22680412 60
rs6415154 1 127520 + T C 98 0.98 0.10204082 78
rs1811102 1 129149 - A T 100 1.00 0.18500000 69
rs5369480 1 129511 - C G 100 1.00 0.32500000 45
rs8662214 1 130181 - T G 99 0.99 0.48989899 25
rs4976567 1 131496 - G C 100 1.00 0.31500000 47
rs4427297 1 132306 + G A 99 0.99 0.07070707 87
rs1926304 1 132612 + G A 98 0.98 0.18877551 67
rs9440103 1 133206 - T A 100 1.00 0.50500000 24
rs1879084 1 135013 + G T 95 0.95 0.16842105 64
rs394658 1 136281 - C G 99 0.99 0.44444444 30
rs5808387 1 136979 - A C 97 0.97 0.05670103 86
rs5083707 1 138533 + A G 99 0.99 0.23232323 60
rs9315927 1 140225 - C A 99 0.99 0.17676768 65
rs8235155 1 141323 + G T 99 0.99 0.13131313 74
rs6747426 1 143162 + A G 99 0.99 0.19696970 65
rs6814087 1 153521 - T G 100 1.00 0.45500000 26
rs7705971 1 154272 - G C 99 0.99 0.46464646 24
rs8433326 1 156971 + G A 99 0.99 0.11616162 77
rs8586929 1 157017 - G A 100 1.00 0.11500000 78
rs4897041 1 159979 - T G 98 0.98 0.11224490 77
rs6555154 1 160870 - A T 100 1.00 0.11500000 78
rs7240162 1 167804 + T G 97 0.97 0.15463918 69
rs8441911 1 168304 + T A 99 0.99 0.11616162 76
rs9759883 1 168559 - C T 98 0.98 0.11734694 75
rs6214007 1 168633 + C G 98 0.98 0.09693878 80
rs7696980 1 170838 - T A 100 1.00 0.19000000 65
rs3370279 1 170916 + A C 100 1.00 0.18000000 67
rs906265 1 177563 - C A 100 1.00 0.35500000 46
rs6283383 1 183097 + A T 100 1.00 0.68500000 10
rs5336386 1 184711 + C G 98 0.98 0.08163265 83
rs5492208 1 187642 - G A 100 1.00 0.09000000 84
rs6905474 1 189405 - T G 99 0.99 0.22222222 61
rs4159423 1 197131 + T A 100 1.00 0.05500000 89
rs9395116 1 198007 - A T 99 0.99 0.68686869 12
rs6919775 1 198315 - A T 100 1.00 0.19000000 69
rs3676914 1 200588 - T G 99 0.99 0.13636364 74
rs7491263 1 201092 - G T 99 0.99 0.12121212 78
rs3621305 1 202665 + G A 96 0.96 0.10937500 76
rs7484854 1 203519 + G A 98 0.98 0.09693878 79
rs3789361 1 204053 + T A 99 0.99 0.05555556 89
rs5682330 1 210355 - G T 98 0.98 0.78571429 6
rs9558261 1 212310 + G C 98 0.98 0.07142857 84
rs6456733 1 212516 - T A 98 0.98 0.16326531 70
rs9698354 1 212812 - C G 100 1.00 0.15500000 71
rs2292307 1 214483 + T G 97 0.97 0.08762887 81
rs3250008 1 215618 + T A 100 1.00 0.10500000 82
rs8455133 1 217179 - G A 100 1.00 0.70000000 8
rs6229703 1 217914 - A T 99 0.99 0.15656566 71
rs5488086 1 218983 - G A 100 1.00 0.25000000 56
rs4384882 1 221523 - G A 100 1.00 0.06500000 87
rs6813055 1 221865 - C T 99 0.99 0.09595960 82
rs7548334 1 221960 + C A 100 1.00 0.10500000 79
rs7868825 1 225557 + T A 99 0.99 0.81818182 4
rs3994777 1 227655 - A C 100 1.00 0.17500000 68
rs5206609 1 229654 + T C 98 0.98 0.15816327 68
rs1246759 1 230225 + T A 99 0.99 0.06060606 87
rs4237279 1 230545 - C A 98 0.98 0.90306122 2
rs6460293 1 231622 - G C 99 0.99 0.09595960 82
rs7767980 1 232439 + A T 98 0.98 0.26530612 50
rs6724871 1 232626 - T C 98 0.98 0.68877551 5
rs6891376 1 234176 - T C 99 0.99 0.63636364 9
rs8239337 1 234512 - G A 98 0.98 0.05612245 89
rs4996865 1 234749 - T G 98 0.98 0.26530612 50
rs8921797 1 234808 + A G 99 0.99 0.12121212 76
rs9375076 1 235601 - A G 100 1.00 0.34000000 39
rs6824356 1 236327 - G T 98 0.98 0.05102041 89
rs7205132 1 237860 + C G 99 0.99 0.66666667 6
rs2511745 1 239315 - G C 99 0.99 0.69191919 6
rs8946585 1 241650 - T G 99 0.99 0.05050505 89
rs8931480 1 242297 - C T 99 0.99 0.29292929 48
rs7661772 1 243549 + A T 99 0.99 0.17676768 66
rs7923986 1 243721 + A C 100 1.00 0.22000000 59
rs5668230 1 244657 + T C 97 0.97 0.31443299 43
rs1902000 1 246687 - G C 100 1.00 0.05000000 90
rs507463 1 247290 + C T 99 0.99 0.07575758 85
rs8137116 1 248281 - C A 98 0.98 0.27551020 51
rs6941483 1 249065 + T G 99 0.99 0.42424242 34
rs9457223 1 250746 - T G 99 0.99 0.08080808 83
rs6811993 1 253050 + T C 100 1.00 0.10500000 80
rs772087 1 253518 - G T 99 0.99 0.43434343 33
rs4522233 1 255025 + C G 100 1.00 0.18000000 66
rs8284299 1 257079 - T A 98 0.98 0.06122449 86
rs4117425 1 257367 + A C 96 0.96 0.11979167 74
rs544722 1 261600 - T G 98 0.98 0.58673469 15
rs9918092 1 262688 - T G 99 0.99 0.07575758 85
rs2343852 1 263008 + A T 98 0.98 0.08673469 82
rs5970403 1 267025 - G A 99 0.99 0.13131313 75
rs8300279 1 267069 - T C 100 1.00 0.59000000 16
rs8601678 1 267595 + A C 100 1.00 0.13500000 73
rs8703197 1 268684 - C G 99 0.99 0.08080808 84
rs3475564 1 274929 - C G 99 0.99 0.67676768 10
rs5272191 1 276372 - G A 98 0.98 0.17346939 65
rs352871 1 277155 + A C 100 1.00 0.55500000 22
rs3184695 1 279240 + G T 98 0.98 0.23979592 56
rs9008382 1 285275 - T G 98 0.98 0.34693878 40
rs3558673 1 287388 + A G 97 0.97 0.08247423 81
rs349703 1 287589 + C T 96 0.96 0.47395833 26
rs4727749 1 289186 - C A 100 1.00 0.12500000 75
rs8282233 1 291678 - A C 100 1.00 0.17500000 69
rs3908903 1 291826 - T A 97 0.97 0.35567010 41
rs8902114 1 293417 + C G 100 1.00 0.08000000 85
rs5258425 1 293532 + A C 99 0.99 0.25757576 55
rs1284449 1 293721 + C G 99 0.99 0.08080808 83
rs3873446 1 303489 - A T 99 0.99 0.08080808 84
rs2424211 1 303657 + T A 97 0.97 0.23195876 56
rs8198746 1 306825 + T G 100 1.00 0.41500000 29
rs5545900 1 306937 - A C 100 1.00 0.13000000 77
rs9184896 1 307040 + A T 98 0.98 0.41836735 28
rs9098566 1 308994 + T A 100 1.00 0.17000000 70
rs9473571 1 310830 + T C 98 0.98 0.05102041 88
rs4794775 1 312898 - T C 99 0.99 0.08080808 83
rs4498044 1 314597 + T G 100 1.00 0.05000000 90
rs7948463 1 315405 + T G 100 1.00 0.08500000 84
rs6723655 1 317341 - A T 98 0.98 0.15306122 69
rs8738697 1 317628 - T A 97 0.97 0.30927835 47
rs4707585 1 319188 + G A 99 0.99 0.10606061 78
rs6073560 1 320517 - A T 100 1.00 0.59000000 12
rs4528092 1 322180 + T G 99 0.99 0.27777778 52
rs5011287 1 324806 - A G 96 0.96 0.15625000 68
rs1153502 1 328124 - C T 97 0.97 0.15463918 68
rs3784562 1 328425 + A G 100 1.00 0.15500000 71
rs7931370 1 329566 - C A 100 1.00 0.05000000 90
rs8952199 1 331490 - T G 96 0.96 0.17708333 62
rs4848158 1 336092 - T A 97 0.97 0.20103093 62
rs216627 1 336158 + T A 100 1.00 0.09500000 81
rs5610155 1 338527 - C T 100 1.00 0.06500000 87
rs2968629 1 338621 + G C 99 0.99 0.18686869 66
rs2828447 1 340512 + T G 97 0.97 0.43814433 31
rs9382560 1 341768 + T C 98 0.98 0.12244898 75
rs4101416 1 347307 + C G 98 0.98 0.08673469 81
rs1468226 1 351252 + T G 100 1.00 0.62500000 13
rs4447326 1 355758 + G T 99 0.99 0.10101010 79
rs4451241 1 355835 - G C 100 1.00 0.90000000 0
rs3948449 1 360296 - T G 95 0.95 0.73684211 6
rs643395 1 360694 - T C 98 0.98 0.26020408 53
rs6593616 1 360784 - C G 100 1.00 0.74000000 6
rs7564587 1 361578 + G C 100 1.00 0.26000000 55
rs1258170 1 363155 - C A 99 0.99 0.25252525 53
rs4767927 1 365253 + T A 100 1.00 0.05500000 89
rs7067741 1 366334 - C A 100 1.00 0.21000000 62
rs245122 1 366653 + A T 97 0.97 0.51546392 21
rs9611278 1 369898 + C T 99 0.99 0.26262626 54
rs5074315 1 370971 - T C 99 0.99 0.11111111 80
rs862235 1 372279 + C A 98 0.98 0.20918367 61
rs456337 1 378922 + C A 100 1.00 0.11000000 79
rs2048088 1 382578 - A C 99 0.99 0.16161616 70
rs6927636 1 385190 - G A 99 0.99 0.33333333 39
rs6836680 1 389100 + T G 98 0.98 0.29591837 44
rs2149111 1 390467 - T C 99 0.99 0.52020202 19
rs9243897 1 390911 + T G 100 1.00 0.47000000 25
rs1895249 1 391816 + G T 99 0.99 0.05555556 88
rs5919840 1 392887 - A T 98 0.98 0.53061224 17
rs43794 1 395844 + G A 99 0.99 0.51010101 21
rs5855426 1 396949 - T A 99 0.99 0.05555556 88
rs3104936 1 399007 - C A 99 0.99 0.16161616 70
rs1541018 1 400990 + A C 97 0.97 0.14432990 71
rs7202157 1 402587 - A C 98 0.98 0.64795918 10
rs6542609 1 403756 - G C 98 0.98 0.49489796 23
rs8319541 1 405243 - A C 99 0.99 0.16161616 69
rs7001801 1 408743 + T C 100 1.00 0.05500000 89
rs3448533 1 413424 + C T 98 0.98 0.15816327 72
rs2511979 1 414324 + G C 98 0.98 0.44387755 33
rs3189840 1 418004 - T A 100 1.00 0.05000000 90
rs857233 1 419165 + G A 99 0.99 0.38383838 37
rs2280230 1 420022 - A C 99 0.99 0.38888889 36
rs1434958 1 422018 + G A 99 0.99 0.15656566 73
rs4464085 1 424168 + T G 99 0.99 0.09595960 80
rs4367682 1 424431 - C G 97 0.97 0.09793814 78
rs1847082 1 426492 - C G 100 1.00 0.09500000 81
rs462915 1 428938 - A G 99 0.99 0.11111111 77
rs8515324 1 430207 - T A 99 0.99 0.11111111 77
rs31643 1 437511 + G T 99 0.99 0.08585859 82
rs7594085 1 442351 + C T 98 0.98 0.55102041 24
rs5122217 1 442557 - A T 99 0.99 0.55050505 24
rs3057043 1 444698 + T C 99 0.99 0.50000000 25
rs2562920 1 445536 + T A 100 1.00 0.46000000 33
rs1959251 1 446914 + G T 100 1.00 0.13000000 75
rs6967513 1 447982 + G T 99 0.99 0.12626263 75
rs7390215 1 448836 + G C 97 0.97 0.48969072 27
rs573953 1 450813 + A G 100 1.00 0.09500000 81
rs1839834 1 451009 - C T 99 0.99 0.52020202 25
rs2770314 1 451132 + T A 99 0.99 0.47979798 29
rs4984384 1 454869 + A T 99 0.99 0.53030303 22
rs4813739 1 461752 - G A 100 1.00 0.14000000 75
rs3517068 1 462337 - G T 97 0.97 0.13402062 74
rs1566481 1 464873 - A C 100 1.00 0.07000000 86
rs5194845 1 467836 - G T 99 0.99 0.06565657 86
rs8202279 1 469625 + T G 99 0.99 0.75252525 3
rs2289259 1 469878 + C T 99 0.99 0.24242424 54
rs3950278 1 470318 + T G 99 0.99 0.75757576 3
rs5000064 1 471057 + A G 99 0.99 0.21212121 59
rs4615980 1 472043 + C A 100 1.00 0.78500000 2
rs1810657 1 472430 + A G 98 0.98 0.21428571 58
rs5714068 1 473146 + T C 99 0.99 0.07575758 84
rs268828 1 473168 + C T 98 0.98 0.20918367 59
rs3315306 1 473531 + C G 99 0.99 0.50000000 23
rs3876791 1 473622 + C T 100 1.00 0.50000000 23
rs8000735 1 475137 - G A 100 1.00 0.16000000 69
rs6735029 1 478966 - T C 100 1.00 0.22000000 60
rs6964952 1 480600 + T C 100 1.00 0.22000000 60
rs3166448 1 480677 - G A 100 1.00 0.21500000 59
rs1997430 1 482016 - C G 100 1.00 0.75000000 4
rs3184748 1 485464 + A C 100 1.00 0.21500000 59
rs9269083 1 485830 + A T 99 0.99 0.52020202 21
rs2322212 1 486028 + C T 100 1.00 0.26500000 53
rs9401701 1 486255 - C G 100 1.00 0.52000000 21
rs1511382 1 487354 - C G 98 0.98 0.30102041 47
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rs7154730 1 494244 + C G 98 0.98 0.14795918 70
rs6699680 1 497002 + T A 99 0.99 0.42424242 34
rs4256631 1 497187 - C T 98 0.98 0.42857143 33
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rs4786761 1 497790 - C T 100 1.00 0.43000000 34
rs8039393 1 498941 - A C 97 0.97 0.41237113 34
rs6444198 1 500076 + T G 100 1.00 0.41500000 34
rs9271913 1 500766 - C T 99 0.99 0.41919192 33
rs5739754 1 500920 + T G 99 0.99 0.41919192 33
rs1679173 1 502558 - C T 100 1.00 0.58500000 17
rs1854198 1 503396 - A G 100 1.00 0.08500000 84
rs2903874 1 504474 + C T 99 0.99 0.39393939 34
rs5560759 1 512371 + A C 99 0.99 0.07575758 85
rs534965 1 516569 + T C 100 1.00 0.07000000 86
rs2184023 1 522709 - G C 100 1.00 0.66000000 14
rs648972 1 525743 + T A 100 1.00 0.64500000 11
rs7531548 1 525832 + G A 100 1.00 0.35500000 40
rs2234528 1 526064 + A C 98 0.98 0.05612245 88
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rs2667796 1 527407 - G A 100 1.00 0.06500000 87
rs5636042 1 532581 + A T 100 1.00 0.78500000 3
rs362769 1 533097 + A T 99 0.99 0.74747475 4
rs326078 1 533613 - T C 100 1.00 0.47000000 25
rs5093478 1 535608 + G T 99 0.99 0.79292929 2
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rs1834613 1 572190 - T A 99 0.99 0.08080808 83
rs9522967 1 572277 + A G 99 0.99 0.11616162 76
rs3512071 1 575330 + T A 100 1.00 0.60000000 15
rs3224591 1 577599 - A G 100 1.00 0.38500000 36
rs1651794 1 578649 + C T 98 0.98 0.61224490 14
rs954198 1 579370 - C T 98 0.98 0.09183673 80
rs5526864 1 582031 + A G 97 0.97 0.12371134 75
rs712515 1 582168 + G T 98 0.98 0.12244898 76
rs9583539 1 587676 + G T 100 1.00 0.09000000 82
rs4973850 1 590237 + C A 99 0.99 0.11111111 79
rs6572341 1 590894 + T G 99 0.99 0.12121212 79
rs9667198 1 592812 + T G 100 1.00 0.57500000 16
rs7918628 1 593661 - T G 97 0.97 0.06185567 86
rs6197501 1 594266 + G T 99 0.99 0.72222222 10
rs197578 1 597180 - C A 98 0.98 0.73979592 6
rs7500749 1 599834 + C A 97 0.97 0.15979381 69
rs5246594 1 599845 + G A 98 0.98 0.11734694 77
rs1582877 1 601185 + C A 100 1.00 0.05000000 90
rs1554655 1 602173 + T A 99 0.99 0.12121212 77
rs9286168 1 602663 - G A 99 0.99 0.12121212 77
rs6353848 1 604097 + A G 99 0.99 0.65151515 10
rs7364288 1 605477 + T C 97 0.97 0.12886598 74
rs7338986 1 610098 - T C 100 1.00 0.13500000 76
rs9126667 1 611220 + C G 99 0.99 0.69696970 9
rs3370169 1 611276 + A C 99 0.99 0.11616162 77
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RepeatABEL documentation built on May 30, 2017, 2:27 a.m.
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Example GenABEL data
Usage
1 |
Examples
1 2 |
Example output
Loading required package: hglm
Loading required package: Matrix
Loading required package: MASS
Loading required package: hglm.data
Loading required package: sp
hglm: Hierarchical Generalized Linear Models
Version 2.2-1 (2019-04-04) installed
Authors: Moudud Alam, Lars Ronnegard, Xia Shen
Maintainer: Xia Shen <xia.shen@ki.se>
Use citation("hglm") to know how to cite our work.
Discussion: https://r-forge.r-project.org/forum/?group_id=558
BugReports: https://r-forge.r-project.org/tracker/?group_id=558
VideoTutorials: http://www.youtube.com/playlist?list=PLn1OmZECD-n15vnYzvJDy5GxjNpVV5Jr8
Loading required package: GenABEL
Loading required package: GenABEL.data
Chromosome Position Strand A1 A2 NoMeasured CallRate Q.2 P.11
rs1646456 1 653 + C G 100 1.00 0.31000000 46
rs4785242 1 1766 - T C 99 0.99 0.61111111 14
rs4435802 1 5291 + C A 100 1.00 0.08000000 84
rs2847446 1 5555 + T A 98 0.98 0.30102041 48
rs946364 1 8533 - T C 97 0.97 0.23711340 57
rs299251 1 10737 + A G 98 0.98 0.06632653 85
rs2456488 1 11779 + G C 100 1.00 0.35500000 42
rs1292700 1 12710 - A C 100 1.00 0.39000000 39
rs8183220 1 17110 - G A 98 0.98 0.05102041 89
rs1559539 1 18457 + G T 100 1.00 0.15000000 71
rs6599877 1 19833 + A T 99 0.99 0.23737374 58
rs175910 1 22311 - G T 98 0.98 0.21428571 62
rs1919938 1 22314 + T G 99 0.99 0.71717172 9
rs5370174 1 22450 + T A 99 0.99 0.11616162 78
rs4619550 1 25768 - G T 97 0.97 0.09793814 80
rs1116030 1 27044 + A G 99 0.99 0.08585859 82
rs934875 1 27739 + A T 99 0.99 0.13131313 74
rs7844309 1 31482 - C G 99 0.99 0.51010101 22
rs9604299 1 33575 + A T 99 0.99 0.09090909 81
rs6735432 1 34812 + C G 99 0.99 0.12121212 76
rs2968893 1 37507 + T C 98 0.98 0.07142857 84
rs9807290 1 42149 + G T 100 1.00 0.15000000 73
rs9218131 1 43942 - T A 99 0.99 0.06060606 87
rs2689086 1 47084 + G A 98 0.98 0.06632653 85
rs1517354 1 47682 - C A 98 0.98 0.69387755 6
rs5308242 1 49872 - T A 98 0.98 0.22448980 56
rs249927 1 51795 - T G 100 1.00 0.86000000 1
rs4961344 1 53176 + G T 100 1.00 0.10500000 80
rs7305258 1 53254 + A G 99 0.99 0.73737374 9
rs6770110 1 53651 - A G 100 1.00 0.27000000 56
rs8059824 1 53687 + A C 100 1.00 0.22000000 58
rs5889476 1 54374 - C A 99 0.99 0.13131313 75
rs3406206 1 55838 - T A 99 0.99 0.51010101 25
rs34949 1 56690 + C G 97 0.97 0.51030928 24
rs9395473 1 57803 + T A 100 1.00 0.49500000 26
rs1525102 1 58063 + A T 99 0.99 0.50505051 25
rs4602281 1 58779 - T G 98 0.98 0.47448980 26
rs2537006 1 59031 + G A 98 0.98 0.45918367 28
rs9740406 1 64799 + G T 96 0.96 0.51562500 20
rs5657810 1 66993 - C G 100 1.00 0.29500000 51
rs9080376 1 67292 - C T 99 0.99 0.08080808 84
rs1307787 1 68574 + G A 100 1.00 0.19500000 64
rs2939190 1 71843 - A G 99 0.99 0.20707071 61
rs1857718 1 73611 - T C 100 1.00 0.05000000 90
rs3304816 1 76637 + C A 99 0.99 0.67171717 10
rs6029233 1 77973 + A C 99 0.99 0.24242424 56
rs3856709 1 80141 - G T 100 1.00 0.05000000 90
rs8644749 1 81338 + C A 100 1.00 0.13500000 75
rs3926499 1 81517 - T G 99 0.99 0.14646465 73
rs989021 1 83865 + G A 98 0.98 0.11734694 77
rs5192323 1 85141 - C T 99 0.99 0.11111111 79
rs105659 1 85621 - T A 96 0.96 0.26041667 54
rs4234616 1 86544 - A T 100 1.00 0.09000000 82
rs5131126 1 86548 + G C 99 0.99 0.17171717 67
rs9174700 1 87184 - C A 99 0.99 0.11616162 78
rs8636328 1 89457 - G A 100 1.00 0.88500000 2
rs1506397 1 89472 + C G 100 1.00 0.88500000 2
rs7201791 1 89954 + G A 100 1.00 0.11500000 79
rs4300981 1 91620 + C T 98 0.98 0.88775510 2
rs8487702 1 92219 - G C 100 1.00 0.88500000 2
rs1149006 1 93356 - C T 99 0.99 0.11111111 79
rs1417620 1 94207 + G T 99 0.99 0.11616162 78
rs6544260 1 96214 - A T 99 0.99 0.84343434 3
rs6258447 1 100325 + G C 99 0.99 0.09595960 81
rs884310 1 101791 - T A 96 0.96 0.11979167 75
rs4084365 1 102483 + C T 100 1.00 0.13500000 76
rs6482496 1 106655 - T A 99 0.99 0.20202020 61
rs7962427 1 107065 + A G 96 0.96 0.11979167 75
rs4196655 1 109933 + A T 99 0.99 0.11616162 78
rs5604984 1 115500 - G T 100 1.00 0.13000000 76
rs3233253 1 115613 - T G 99 0.99 0.22727273 58
rs1357966 1 123162 + A G 100 1.00 0.21000000 60
rs278643 1 125911 + A C 97 0.97 0.22680412 60
rs6415154 1 127520 + T C 98 0.98 0.10204082 78
rs1811102 1 129149 - A T 100 1.00 0.18500000 69
rs5369480 1 129511 - C G 100 1.00 0.32500000 45
rs8662214 1 130181 - T G 99 0.99 0.48989899 25
rs4976567 1 131496 - G C 100 1.00 0.31500000 47
rs4427297 1 132306 + G A 99 0.99 0.07070707 87
rs1926304 1 132612 + G A 98 0.98 0.18877551 67
rs9440103 1 133206 - T A 100 1.00 0.50500000 24
rs1879084 1 135013 + G T 95 0.95 0.16842105 64
rs394658 1 136281 - C G 99 0.99 0.44444444 30
rs5808387 1 136979 - A C 97 0.97 0.05670103 86
rs5083707 1 138533 + A G 99 0.99 0.23232323 60
rs9315927 1 140225 - C A 99 0.99 0.17676768 65
rs8235155 1 141323 + G T 99 0.99 0.13131313 74
rs6747426 1 143162 + A G 99 0.99 0.19696970 65
rs6814087 1 153521 - T G 100 1.00 0.45500000 26
rs7705971 1 154272 - G C 99 0.99 0.46464646 24
rs8433326 1 156971 + G A 99 0.99 0.11616162 77
rs8586929 1 157017 - G A 100 1.00 0.11500000 78
rs4897041 1 159979 - T G 98 0.98 0.11224490 77
rs6555154 1 160870 - A T 100 1.00 0.11500000 78
rs7240162 1 167804 + T G 97 0.97 0.15463918 69
rs8441911 1 168304 + T A 99 0.99 0.11616162 76
rs9759883 1 168559 - C T 98 0.98 0.11734694 75
rs6214007 1 168633 + C G 98 0.98 0.09693878 80
rs7696980 1 170838 - T A 100 1.00 0.19000000 65
rs3370279 1 170916 + A C 100 1.00 0.18000000 67
rs906265 1 177563 - C A 100 1.00 0.35500000 46
rs6283383 1 183097 + A T 100 1.00 0.68500000 10
rs5336386 1 184711 + C G 98 0.98 0.08163265 83
rs5492208 1 187642 - G A 100 1.00 0.09000000 84
rs6905474 1 189405 - T G 99 0.99 0.22222222 61
rs4159423 1 197131 + T A 100 1.00 0.05500000 89
rs9395116 1 198007 - A T 99 0.99 0.68686869 12
rs6919775 1 198315 - A T 100 1.00 0.19000000 69
rs3676914 1 200588 - T G 99 0.99 0.13636364 74
rs7491263 1 201092 - G T 99 0.99 0.12121212 78
rs3621305 1 202665 + G A 96 0.96 0.10937500 76
rs7484854 1 203519 + G A 98 0.98 0.09693878 79
rs3789361 1 204053 + T A 99 0.99 0.05555556 89
rs5682330 1 210355 - G T 98 0.98 0.78571429 6
rs9558261 1 212310 + G C 98 0.98 0.07142857 84
rs6456733 1 212516 - T A 98 0.98 0.16326531 70
rs9698354 1 212812 - C G 100 1.00 0.15500000 71
rs2292307 1 214483 + T G 97 0.97 0.08762887 81
rs3250008 1 215618 + T A 100 1.00 0.10500000 82
rs8455133 1 217179 - G A 100 1.00 0.70000000 8
rs6229703 1 217914 - A T 99 0.99 0.15656566 71
rs5488086 1 218983 - G A 100 1.00 0.25000000 56
rs4384882 1 221523 - G A 100 1.00 0.06500000 87
rs6813055 1 221865 - C T 99 0.99 0.09595960 82
rs7548334 1 221960 + C A 100 1.00 0.10500000 79
rs7868825 1 225557 + T A 99 0.99 0.81818182 4
rs3994777 1 227655 - A C 100 1.00 0.17500000 68
rs5206609 1 229654 + T C 98 0.98 0.15816327 68
rs1246759 1 230225 + T A 99 0.99 0.06060606 87
rs4237279 1 230545 - C A 98 0.98 0.90306122 2
rs6460293 1 231622 - G C 99 0.99 0.09595960 82
rs7767980 1 232439 + A T 98 0.98 0.26530612 50
rs6724871 1 232626 - T C 98 0.98 0.68877551 5
rs6891376 1 234176 - T C 99 0.99 0.63636364 9
rs8239337 1 234512 - G A 98 0.98 0.05612245 89
rs4996865 1 234749 - T G 98 0.98 0.26530612 50
rs8921797 1 234808 + A G 99 0.99 0.12121212 76
rs9375076 1 235601 - A G 100 1.00 0.34000000 39
rs6824356 1 236327 - G T 98 0.98 0.05102041 89
rs7205132 1 237860 + C G 99 0.99 0.66666667 6
rs2511745 1 239315 - G C 99 0.99 0.69191919 6
rs8946585 1 241650 - T G 99 0.99 0.05050505 89
rs8931480 1 242297 - C T 99 0.99 0.29292929 48
rs7661772 1 243549 + A T 99 0.99 0.17676768 66
rs7923986 1 243721 + A C 100 1.00 0.22000000 59
rs5668230 1 244657 + T C 97 0.97 0.31443299 43
rs1902000 1 246687 - G C 100 1.00 0.05000000 90
rs507463 1 247290 + C T 99 0.99 0.07575758 85
rs8137116 1 248281 - C A 98 0.98 0.27551020 51
rs6941483 1 249065 + T G 99 0.99 0.42424242 34
rs9457223 1 250746 - T G 99 0.99 0.08080808 83
rs6811993 1 253050 + T C 100 1.00 0.10500000 80
rs772087 1 253518 - G T 99 0.99 0.43434343 33
rs4522233 1 255025 + C G 100 1.00 0.18000000 66
rs8284299 1 257079 - T A 98 0.98 0.06122449 86
rs4117425 1 257367 + A C 96 0.96 0.11979167 74
rs544722 1 261600 - T G 98 0.98 0.58673469 15
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rs5970403 1 267025 - G A 99 0.99 0.13131313 75
rs8300279 1 267069 - T C 100 1.00 0.59000000 16
rs8601678 1 267595 + A C 100 1.00 0.13500000 73
rs8703197 1 268684 - C G 99 0.99 0.08080808 84
rs3475564 1 274929 - C G 99 0.99 0.67676768 10
rs5272191 1 276372 - G A 98 0.98 0.17346939 65
rs352871 1 277155 + A C 100 1.00 0.55500000 22
rs3184695 1 279240 + G T 98 0.98 0.23979592 56
rs9008382 1 285275 - T G 98 0.98 0.34693878 40
rs3558673 1 287388 + A G 97 0.97 0.08247423 81
rs349703 1 287589 + C T 96 0.96 0.47395833 26
rs4727749 1 289186 - C A 100 1.00 0.12500000 75
rs8282233 1 291678 - A C 100 1.00 0.17500000 69
rs3908903 1 291826 - T A 97 0.97 0.35567010 41
rs8902114 1 293417 + C G 100 1.00 0.08000000 85
rs5258425 1 293532 + A C 99 0.99 0.25757576 55
rs1284449 1 293721 + C G 99 0.99 0.08080808 83
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rs2424211 1 303657 + T A 97 0.97 0.23195876 56
rs8198746 1 306825 + T G 100 1.00 0.41500000 29
rs5545900 1 306937 - A C 100 1.00 0.13000000 77
rs9184896 1 307040 + A T 98 0.98 0.41836735 28
rs9098566 1 308994 + T A 100 1.00 0.17000000 70
rs9473571 1 310830 + T C 98 0.98 0.05102041 88
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rs4498044 1 314597 + T G 100 1.00 0.05000000 90
rs7948463 1 315405 + T G 100 1.00 0.08500000 84
rs6723655 1 317341 - A T 98 0.98 0.15306122 69
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P.12 P.22 Pexact Fmax Plrt
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