cr_source.default: Visualized for CR Sources

In RepertoiR: Repertoire Graphical Visualization

Description

Visualization of Two clones for their convergent recombination (CR) sources. Each sequence (NT) is represented as a colored bar (red for A, yellow for G, blue for T and green for C) linked to its translated amino acid sequence by a colored line, red for the first clone and blue for the second.

Usage

## Default S3 method:
cr_source(clone1, clone2, ...)

Arguments

clone1	First vector of sequences, string-length is the same for each nucleotide sequence ('A', 'G', 'T', 'C').
clone2	Second vector of sequences, same string-length as for the first vector.
...	Any other arguments.

Value

No return value.

Examples

nt <- c("A", "G", "C", "T")
seq_len <- 15
seq_n <- c(12, 7)

# Create data
c1 <- replicate(seq_n[1],
                paste(sample(nt, seq_len, replace = TRUE), collapse = ''))
c2 <- replicate(seq_n[2],
                paste(sample(nt, seq_len, replace = TRUE), collapse = ''))

cr_source(c1, c2)

RepertoiR documentation built on Oct. 25, 2021, 9:09 a.m.