Man pages for Rgff
R Utilities for GFF Files

check_gff	Test consistency and order of a GFF file
check_gff3	Test consistency and order of a GFF3 file
check_gtf	Test consistency and order of a GTF file
get_features	Analyses the feature type hierarchy of a GFF file
get_pairs_from_gff	Creates a features pair file from a GFF file
get_pairs_from_gff3	Creates a features pair file from a GFF file
get_pairs_from_gtf	Creates a features pair file from a GTF file
gff3_to_paths	Creates a features path file from a GFF file
gff_stats	Summarizes the number of features of each type in a GFF file
gff_stats_by_chr	Summarizes the number of elements of each type in each...
gtf_to_gff3	Converts a GTF file into a GFF3 file
gtf_to_paths	Creates a features path file from a GTF file
pipe	Pipe operator
plot_features	Plots or exports an image of the feature tree from a GFF file
saf_from_gff	Creates a SAF file from a GTF/GFF3 features for the given...
saf_from_gff3	Creates a SAF file from a GFF3 for the given pairs of blocks...
saf_from_paths	Generates SAF formatted data from a features path file for...
sort_gff	Sorts a GTF/GFF3 file
sort_gff3	Sorts a GFF3 file
sort_gtf	Sorts a GTF file