get_pairs_from_gff: Creates a features pair file from a GFF file

In Rgff: R Utilities for GFF Files

Creates a features pair file from a GFF file

Description

This function creates a features pair file from a GFF file

Usage

get_pairs_from_gff(
  inFile,
  outFile,
  fileType = c("AUTO", "GFF3", "GTF"),
  forceOverwrite = FALSE
)

Arguments

inFile	Path to the input GFF file
outFile	Path to the output features pair file, if not provided the output will be inFile.pairs
fileType	Version of the input file (GTF/GFF3). Default AUTO: determined from the file name.
forceOverwrite	If output file exists, overwrite the existing file. (default FALSE)

Value

Path to the generated features pair file

Rgff documentation built on Sept. 30, 2022, 5:08 p.m.