Find gaps in proteins based on euclidean distance between residues of the backbone. Return gap positions and accordingly split a chain in subchains.
findGaps(points3D, cutoff = 7)
an N x 3 matrix of the x, y, z coordinates of a polygonal link
numeric (in Angstrom), distances between consecutive alpha-Carbon atoms
cutoff is set to 7, approximately twice the average distance between two consecutive alpha-Carbon atoms.
a list of matrices containing the x, y, z coordinates of the split chains.
Gap finding is highly recommended. Notice that it is performed by default by
loadProtein and that
in the following example this option has been disabled by purpose.
This is a low-level function.
Federico Comoglio, [email protected]
1 2 3 4 5 6 7 8
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.