RxODE: Facilities for Simulating from ODE-Based Models

Facilities for running simulations from ordinary differential equation (ODE) models, such as pharmacometrics and other compartmental models. A compilation manager translates the ODE model into C, compiles it, and dynamically loads the object code into R for improved computational efficiency. An event table object facilitates the specification of complex dosing regimens (optional) and sampling schedules.

Install the latest version of this package by entering the following in R:
install.packages("RxODE")
AuthorMelissa Hallow [aut], Matthew L. Fidler [aut], Wenping Wang [aut, cre]
Date of publication2017-03-28 06:11:49 UTC
MaintainerWenping Wang <wwang8198@gmail.com>
LicenseGPL (>= 2)
Version0.5-6
https://www.r-project.org
https://github.com/hallowkm/RxODE

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Files

inst
inst/Changes.txt
inst/TODO.txt
inst/Porting
inst/tran.g
inst/common
inst/common/call_dvode.c
inst/THANKS
inst/Install-windows.Rmd
inst/doc
inst/doc/RxODE-intro.html
inst/doc/index.html
inst/doc/RxODE-syntax.html
inst/doc/RxODE-intro.R inst/doc/RxODE-syntax.R
inst/doc/RxODE-intro.Rmd
inst/doc/RxODE-syntax.Rmd
tests
tests/test-multi.R
tests/Examples
tests/Examples/RxODE.Rout.save
tests/Examples/eventTable.Rout.save
tests/test-basic.R tests/test3.1.R tests/test3.2.R tests/test-parsing.R
src
src/Makefile
src/install.libs.R
src/ode
src/ode/Makefile
src/ode/opkda2.f
src/ode/dlsoda.f
src/ode/dop853.c
src/ode/opkda1_abbr.f
src/ode/dop853.h
src/ode/vode.f
src/Makefile.win
src/dparser
src/dparser/4calc.in
src/dparser/util.c
src/dparser/index.html
src/dparser/orig-Makefile
src/dparser/gram.h
src/dparser/write_tables.c
src/dparser/dparse_tables.h
src/dparser/gramgram.h
src/dparser/COPYRIGHT
src/dparser/gram.c
src/dparser/tests
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src/dparser/read_binary.h
src/dparser/verilog
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src/dparser/verilog/ambig.c
src/dparser/verilog/vparse.c
src/dparser/verilog/verilog.g
src/dparser/verilog/README
src/dparser/verilog/verilog_tests
src/dparser/verilog/vparse.h
src/dparser/read_binary.c
src/dparser/sample_parser.c
src/dparser/baseline
src/dparser/python
src/dparser/python/dparser.i
src/dparser/python/index.html
src/dparser/python/swigpyrun.h
src/dparser/python/tests
src/dparser/python/tests/test4.py
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src/dparser/python/tests/test3.py
src/dparser/python/tests/test.py
src/dparser/python/tests/test2.py
src/dparser/python/tests/test7.py
src/dparser/python/pydparser.c
src/dparser/python/pydparser.h
src/dparser/python/README
src/dparser/python/setup.py
src/dparser/python/dparser.py
src/dparser/python/make_tables.c
src/dparser/python/dparser_wrap.c
src/dparser/python/py_dparser_manual.html
src/dparser/python/contrib
src/dparser/python/contrib/dparserpy.el
src/dparser/python/contrib/dparserpy-syntax_error.py
src/dparser/python/dparser_swigc.py
src/dparser/test_parser.c
src/dparser/lex.h
src/dparser/my.g
src/dparser/scan.h
src/dparser/sample.g
src/dparser/D_BUILD_VERSION
src/dparser/dsymtab.h
src/dparser/arg.h
src/dparser/Makefile.org
src/dparser/symtab.c
src/dparser/README
src/dparser/arg.c
src/dparser/make_dparser.c
src/dparser/faq.html
src/dparser/mkdparse.c
src/dparser/lr.c
src/dparser/4calc.g
src/dparser/make_dparser.cat
src/dparser/parser_tests
src/dparser/parse.h
src/dparser/make_dparser.1
src/dparser/util.h
src/dparser/scan.c
src/dparser/lex.c
src/dparser/d.h
src/dparser/lr.h
src/dparser/driver_parsetree.c
src/dparser/manual.html
src/dparser/grammar.g.c
src/dparser/my.c
src/dparser/mkdparse.h
src/dparser/write_tables.h
src/dparser/parse.c
src/dparser/dparse_tree.c
src/dparser/dparse.h
src/dparser/grammar.g
src/dparser/Makefile.new
src/dparser/CHANGES
src/dparser/version.c
src/dparser/dparse_tree.h
src/tran.c
src/tran.g.d_parser.c
NAMESPACE
demo
demo/demo1.R
demo/00Index
R
R/genShinyApp.template.R R/RxODE.R R/eventTable.R
vignettes
vignettes/Model_schematic_w500.png
vignettes/RxODE-intro.Rmd
vignettes/RxODE-syntax.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/genShinyApp.template.Rd man/eventTable.Rd man/rx.initCmpMgr.Rd man/RxODE.Rd

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