plot_residuals: Plot residuals

In SAMtool: Stock Assessment Methods Toolkit

Plot residuals

Description

Plots figure of residuals (or any time series with predicted mean of zero).

Usage

plot_residuals(
  Year,
  res,
  res_sd = NULL,
  res_sd_CI = 0.95,
  res_upper = NULL,
  res_lower = NULL,
  res_ind_blue = NULL,
  draw_zero = TRUE,
  zero_linetype = 2,
  label = "Residual"
)

Arguments

Year	A vector of years for the data.
res	A vector of residuals.
res_sd	A vector of year specific standard deviation for res.
res_sd_CI	The confidence interval for the error bars based for res_sd.
res_upper	A vector of year-specific upper bounds for the error bars of the residual (in lieu of argument res_CV).
res_lower	A vector of year-specific lower bounds for the error bars of the residual (in lieu of argument res_CV).
res_ind_blue	Indices of obs for which the plotted residuals and error bars will be blue.
draw_zero	Indicates whether a horizontal line should be drawn at zero.
zero_linetype	Passes argument lty (e.g. solid line = 1, dotted = 2) to draw_zero.
label	Character string that describes the data to label the y-axis.

Value

A plot of model residuals by year (optionally, with error bars).

Author(s)

Q. Huynh

See Also

plot_timeseries()

SAMtool documentation built on Sept. 11, 2024, 8:07 p.m.