Files in SAMtool
Stock Assessment Methods Toolkit

MD5
NEWS.md README.md
NAMESPACE
DESCRIPTION
R/RCM_est.R R/HCRs.R R/RCM_int.R R/assess_shortcut.R R/assess_cDD.R R/report_spict.R R/retrospective_AM.R R/define_S4_class_retro.R R/assess_SP.R R/define_S4_class_project.R R/report_auxiliary.R R/report_VPA.R R/define_S4_class_assess_RCMdata.R R/report_SSS.R R/SAMtool-package.R R/assess_DD.R R/report_cDD.R R/report_DD_TMB.R R/define_S4_class_profile.R R/report_SP.R R/interim_MP.R R/Misc_fun.R R/define_S4_class_RCModel.R R/RCM_rmd.R R/assess_VPA.R R/assess_SCA_CAL.R R/report_SCA.R R/zzz.R R/rmd_report.R R/assess_SCA.R R/assess_SCA_DDM.R R/z_MPs.R R/diagnostic.R R/assess_SSS.R R/assess_SCA_RWM.R R/document_data.R R/define_S4_generic_RCM.R R/Ancillary_Indicators.R R/RCM_data.R
src/SAMtool.cpp
inst/include/SP.hpp
inst/include/DD.hpp
inst/include/RCM.hpp
inst/include/functions.hpp
inst/include/VPA.hpp
inst/include/cDD.hpp
inst/include/SCA.hpp
inst/include/ns/ns_DD.hpp
inst/include/ns/ns_RCM.hpp
inst/include/ns/ns_SCA.hpp
inst/include/ns/ns_SP.hpp
inst/include/ns/ns_VPA.hpp
inst/include/ns/ns_cDD.hpp
inst/doc/SAMtool.R
inst/doc/SAMtool.html
inst/doc/SAMtool.Rmd
build/vignette.rds
build/partial.rdb
vignettes/SAMtool.Rmd
vignettes/fig_assess/MSEtool_design.png
vignettes/fig_assess/DD_Tplot2.png
vignettes/fig_assess/DD_retrospective_AM.png
vignettes/fig_assess/DD_profile.png
vignettes/fig_assess/SAMtool_design.png
vignettes/fig_assess/retrospective.png
vignettes/fig_assess/diagnostic_AM.png
vignettes/fig_assess/DD_diagnostic_AM.png
vignettes/fig_assess/retrospective_AM.png
vignettes/fig_assess/DD_TAC.png
vignettes/fig_assess/profile.png
vignettes/fig_assess/DLMtool_process.jpg
vignettes/fig_assess/Tplot.png
data/pcod.rda
data/swordfish.rda
man/plot.prof.Rd man/plot_composition.Rd man/HCRlin.Rd man/Assessment-class.Rd man/plot_SR.Rd man/DD_TMB.Rd man/SCA_CAL.Rd man/TAC_MSY.Rd man/project-class.Rd man/Shortcut.Rd man/swordfish.Rd man/userguide.Rd man/HCR_escapement.Rd man/Probs.Rd man/HCR_ramp.Rd man/diagnostic.Rd man/SSS.Rd man/compare_models.Rd man/HCR_FB.Rd man/SCA.Rd man/Model-based-MP.Rd man/summary.Assessment.Rd man/retro-class.Rd man/plot_lognormalvar.Rd man/plot.RCModel.Rd man/pcod.Rd man/SCA_RWM.Rd man/RCModel-class.Rd man/mahplot.Rd man/plot_timeseries.Rd man/HCR_segment.Rd man/SP_production.Rd man/make_MP.Rd man/profile.Rd man/cDD.Rd man/SP.Rd man/RCM.Rd man/plot.retro.Rd man/projection.Rd man/plot_steepness.Rd man/getinds.Rd man/plot_crosscorr.Rd man/HCR_MSY.Rd man/plot_residuals.Rd man/VPA.Rd man/prelim_AM.Rd man/plot.Assessment.Rd man/plot_betavar.Rd man/PRBcalc.Rd man/RCMdata-class.Rd man/retrospective.Rd man/SAMtool-package.Rd man/retrospective_AM.Rd man/prof-class.Rd man/SCA_DDM.Rd
man/figures/logo.png
SAMtool documentation built on Jan. 12, 2022, 5:07 p.m.