Files in SCdeconR
Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/pathway_analysis.R
R/SCdeconR-package.R
R/reference_construction.R
R/differential_expression.R
R/deconvolution.R
R/globals.R
R/helpers.R
R/simulate_bulk.R
inst/extdata/refdata/phenodata_sample1.txt
inst/extdata/refdata/phenodata_sample2.txt
inst/extdata/refdata/sample1/features.tsv.gz
inst/extdata/refdata/sample1/barcodes.tsv.gz
inst/extdata/refdata/sample1/matrix.mtx.gz
inst/extdata/refdata/sample2/features.tsv.gz
inst/extdata/refdata/sample2/barcodes.tsv.gz
inst/extdata/refdata/sample2/matrix.mtx.gz
inst/extdata/image/rw.png
inst/extdata/gsea/rnkfiles/deres_notadjust.rnk
inst/extdata/gsea/rnkfiles/deres.rnk
inst/extdata/gsea/gmtfile/kegg.gmt
inst/extdata/gsea/results/ct_unadjust/xtools.css
inst/extdata/gsea/results/ct_unadjust/PPAR_SIGNALING_PATHWAY.tsv
inst/extdata/gsea/results/ct_unadjust/gsea_report_for_na_pos_1680642330325.tsv
inst/extdata/gsea/results/ct_unadjust/gsea_report_for_na_neg_1680642330325.tsv
inst/extdata/gsea/results/ct_unadjust/age_unadjust.GseaPreranked.1680642330325.rpt
inst/extdata/gsea/results/ct_unadjust/gene_set_sizes.tsv
inst/extdata/gsea/results/ct_unadjust/ALLOGRAFT_REJECTION.tsv
inst/extdata/gsea/results/ct_unadjust/edb/deres_notadjust.rnk
inst/extdata/gsea/results/ct_unadjust/edb/gene_sets.gmt
inst/extdata/gsea/results/ct_adjust/xtools.css
inst/extdata/gsea/results/ct_adjust/gsea_report_for_na_pos_1680642129036.tsv
inst/extdata/gsea/results/ct_adjust/SYSTEMIC_LUPUS_ERYTHEMATOSUS.tsv
inst/extdata/gsea/results/ct_adjust/P53_SIGNALING_PATHWAY.tsv
inst/extdata/gsea/results/ct_adjust/gsea_report_for_na_neg_1680642129036.tsv
inst/extdata/gsea/results/ct_adjust/gene_set_sizes.tsv
inst/extdata/gsea/results/ct_adjust/GLYCOSPHINGOLIPID_BIOSYNTHESIS.tsv
inst/extdata/gsea/results/ct_adjust/age_adjust.GseaPreranked.1680642129036.rpt
inst/extdata/gsea/results/ct_adjust/edb/deres.rnk
inst/extdata/gsea/results/ct_adjust/edb/gene_sets.gmt
inst/script/tape_deconvolution.py
inst/script/ddls.R
man/reformat_gmt.Rd
man/construct_ref.Rd
man/prop_barplot.Rd
man/comparegsea_scatter.Rd
man/gsea_sumplot.Rd
man/prepare_rnk.Rd
man/load_scdata.Rd
man/scaling.Rd
man/compute_metrics.Rd
man/celltype_expression.Rd
man/transformation.Rd
man/comparedeg_scatter.Rd
man/scdecon.Rd
man/run_de.Rd
man/bulk_generator.Rd
man/SCdeconR-package.Rd
man/gsea_rwplot.Rd
man/gsea_heatmap.Rd
man/figures/SCdeconR.png
