prepare_rnk: Prepare .rnk file for GSEA preranked analysis
In SCdeconR: Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference
View source: R/pathway_analysis.R
prepare_rnk R Documentation
Prepare .rnk file for GSEA preranked analysis
Description
Prepare .rnk file for GSEA preranked analysis
Usage
prepare_rnk(teststats, outputfile, replace = FALSE)
Arguments
teststats
a data.frame containing differential expression results with five columns: "Gene name", "log2 fold change", "log2 average expression",
"p value", "adjusted p value". The second element of the output from function run_de.
outputfile
full path including file name to .rnk file.
replace
a logical value indicating whether to replace the output file if it already exists. Default to FALSE.
Value
No return value
SCdeconR documentation built on May 29, 2024, 9:03 a.m.
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View source: R/pathway_analysis.R
| prepare_rnk | R Documentation |
Prepare .rnk file for GSEA preranked analysis
Description
Prepare .rnk file for GSEA preranked analysis
Usage
prepare_rnk(teststats, outputfile, replace = FALSE)
Arguments
teststats |
a data.frame containing differential expression results with five columns: "Gene name", "log2 fold change", "log2 average expression",
"p value", "adjusted p value". The second element of the output from function |
outputfile |
full path including file name to .rnk file. |
replace |
a logical value indicating whether to replace the output file if it already exists. Default to FALSE. |
Value
No return value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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