gsea_sumplot: Summary plot of gene set enrichment analysis

In SCdeconR: Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference

Summary plot of gene set enrichment analysis

Description

Summary plot of selected up/down regulated gene-sets for gene set enrichment analysis.

Usage

gsea_sumplot(
  gseares_path,
  pos_sel,
  neg_sel,
  pvalflag = TRUE,
  interactive = FALSE
)

Arguments

gseares_path	path to GSEA output.
pos_sel	a character vector of upregulated gene-set names.
neg_sel	a character vector of downregulated gene-set names.
pvalflag	a logical value indicating whether to use adjusted p value in the plot. Default to TRUE.
interactive	a logical value indicating whether to generate an interactive plot. Default to FALSE.

Details

this function does not support output from GSEA R implementation

Value

a ggplot object or plotly object if interactive is set to TRUE

SCdeconR documentation built on May 29, 2024, 9:03 a.m.