gsea_rwplot: GSEA random-walk plot
In SCdeconR: Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference
View source: R/pathway_analysis.R
gsea_rwplot R Documentation
GSEA random-walk plot
Description
Generate high-quality GSEA random-walk figures.
Usage
gsea_rwplot(gseares_path, gsname, class_name, metric_range = NULL)
Arguments
gseares_path
path to GSEA output.
gsname
a character value indicating the gene-set name to generate random-walk plot.
class_name
a character value indicating the class of the gene-set, e.g. "GO".
metric_range
optional range of the ranking metric.
Details
this function does not support output from GSEA R implementation. Scripts initially implemented by Thomas Kuilman.
Value
a random-walk plot for selected gene-set
SCdeconR documentation built on May 29, 2024, 9:03 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/pathway_analysis.R
| gsea_rwplot | R Documentation |
GSEA random-walk plot
Description
Generate high-quality GSEA random-walk figures.
Usage
gsea_rwplot(gseares_path, gsname, class_name, metric_range = NULL)
Arguments
gseares_path |
path to GSEA output. |
gsname |
a character value indicating the gene-set name to generate random-walk plot. |
class_name |
a character value indicating the class of the gene-set, e.g. "GO". |
metric_range |
optional range of the ranking metric. |
Details
this function does not support output from GSEA R implementation. Scripts initially implemented by Thomas Kuilman.
Value
a random-walk plot for selected gene-set
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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