Man pages for SCdeconR
Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference
| bulk_generator | Generate artificial bulk RNA-seq samples based on simulation |
| celltype_expression | Compute cell type specific gene expression |
| comparedeg_scatter | Generate a scatter plot comparing two differential expression... |
| comparegsea_scatter | Generate a scatter plot comparing two gene set enrichment... |
| compute_metrics | Statistical evaluations of predicted cell proportions |
| construct_ref | Integration of single-cell/nuclei RNA-seq data as reference |
| gsea_heatmap | Heatmap to demonstrate enrichment of selected gene-sets |
| gsea_rwplot | GSEA random-walk plot |
| gsea_sumplot | Summary plot of gene set enrichment analysis |
| load_scdata | Load, filter and normalize scRNA-seq/snRNA-seq data |
| prepare_rnk | Prepare .rnk file for GSEA preranked analysis |
| prop_barplot | Bar plot of cell type proportions across samples |
| reformat_gmt | Methods to manipulate .gmt files |
| run_de | Differential expression analysis |
| scaling | Normalization of gene expression data |
| scdecon | Deconvolution of bulk RNA-seq data |
| SCdeconR-package | SCdeconR: Deconvolution of Bulk RNA-Seq Data using... |
| transformation | Transformation of gene expression data |
