ancestors | All ancestors of a collection of nodes |
ancestralID | Determines which edges in a mixed graph are... |
ancestralIdentifyStep | Perform one iteration of ancestral identification. |
createAncestralIdentifier | Create an ancestral identification function. |
createEdgewiseIdentifier | Create an edgewise identification function |
createHalfTrekFlowGraph | Helper function to create a flow graph. |
createHtcIdentifier | Create an htc identification function. |
createHtrGraph | Helper function to create a graph encoding htr relationships. |
createIdentifierBaseCase | Create an identifier base case |
createSimpleBiDirIdentifier | Identify bidirected edges if all directed edges are... |
createTrekFlowGraph | Helper function to create a flow graph. |
createTrekSeparationIdentifier | Create an trek separation identification function |
createTrGraph | Helper function to create a graph encoding trek reachable... |
descendants | Get descendants of a node |
edgewiseID | Determines which edges in a mixed graph are... |
edgewiseIdentifyStep | Perform one iteration of edgewise identification. |
edgewiseTSID | Determines which edges in a mixed graph are edgewiseID+TS... |
flowBetween | Flow from one set of nodes to another. |
FlowGraph | Construct FlowGraph object |
generalGenericID | A general generic identification algorithm template. |
getAncestors | Get getAncestors of nodes in a graph. |
getDescendants | Get descendants of nodes in a graph. |
getHalfTrekSystem | Determines if a half-trek system exists in the mixed graph. |
getMaxFlow | Size of largest HT system Y satisfying the HTC for a node v... |
getMixedCompForNode | Get the mixed component of a node in a mixed subgraph. |
getParents | Get getParents of nodes in a graph. |
getSiblings | Get getSiblings of nodes in a graph. |
getTrekSystem | Determines if a trek system exists in the mixed graph. |
graphID | Identifiability of linear structural equation models. |
graphID.ancestralID | Determine generic identifiability of an acyclic mixed graph... |
graphID.decompose | Determine generic identifiability by Tian Decomposition and... |
graphID.genericID | Determine generic identifiability of a mixed graph. |
graphID.globalID | Check for global identifiability of a mixed graph. |
graphID.htcID | Determines if a mixed graph is HTC-identifiable. |
graphID.main | Helper function to handle a graph component. |
graphID.nonHtcID | Check for generic infinite-to-one via the half-trek... |
htcID | Determines which edges in a mixed graph are HTC-identifiable. |
htcIdentifyStep | Perform one iteration of HTC identification. |
htr | Get all HTR nodes from a set of nodes in a graph. |
htrFrom | Half trek reachable nodes. |
inducedSubgraph | Get the induced subgraph on a collection of nodes |
isSibling | Are two nodes siblings? |
L | Get adjacency matrix for directed part. |
MixedGraph | Construct MixedGraph object |
MixedGraphFixedOrder | Construct MixedGraphFixedOrder object |
mixedGraphHasSimpleNumbering | Checks a MixedGraph has appropriate node numbering |
nodes | Get all nodes in the graph. |
numNodes | Number of nodes in the graph. |
O | Get adjacency matrix for bidirected part. |
parents | All parents a collection of nodes. |
plot | Plots the mixed graph |
plotMixedGraph | Plot a mixed graph |
print.GenericIDResult | Prints a GenericIDResult object |
print.SEMIDResult | Prints a SEMIDResult object |
semID | Identifiability of linear structural equation models. |
SEMID-package | SEMID package documentation. |
siblings | All siblings of a collection of nodes |
stronglyConnectedComponent | Strongly connected component |
stronglyConnectedComponents | Strongly connected components |
subsetsOfSize | Returns all subsets of a certain size |
tianComponent | Returns the Tian c-component of a node |
tianDecompose | Performs the tian decomposition on the mixed graph |
tianIdentifier | Identifies components in a tian decomposition |
tianSigmaForComponent | Globally identify the covariance matrix of a C-component |
toEx | Transforms a vector of node indices in the internal rep. into... |
toIn | Transforms a vector of given node indices into their internal... |
trekSeparationIdentifyStep | Perform one iteration of trek separation identification. |
trFrom | Trek reachable nodes. |
updateEdgeCapacities | Update edge capacities. |
updateVertexCapacities | Update vertex capacities. |
validateMatrices | A helper function to validate input matrices. |
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