Man pages for SEMID
Identifiability of Linear Structural Equation Models
| ancestors | All ancestors of a collection of nodes |
| ancestralID | Determines which edges in a mixed graph are... |
| ancestralIdentifyStep | Perform one iteration of ancestral identification. |
| bidirectedComponents | Get bidirected components of a mixed graph |
| children | All children of a collection of nodes. |
| createAncestralIdentifier | Create an ancestral identification function. |
| createEdgewiseIdentifier | Create an edgewise identification function |
| createHtcIdentifier | Create an htc identification function. |
| createIdentifierBaseCase | Create an identifier base case |
| createLFHtcIdentifier | Create a latent-factor half-trek critierion identification... |
| createLFIdentifierBaseCase | Create an latent identifier base case |
| createSimpleBiDirIdentifier | Identify bidirected edges if all directed edges are... |
| createTrekFlowGraph | Helper function to create a flow graph. |
| createTrekSeparationIdentifier | Create an trek separation identification function |
| createTrGraph | Helper function to create a graph encoding trek reachable... |
| descendants | Get descendants of a collection of observed nodes |
| edgewiseID | Determines which edges in a mixed graph are... |
| edgewiseIdentifyStep | Perform one iteration of edgewise identification. |
| edgewiseTSID | Determines which edges in a mixed graph are edgewiseID+TS... |
| flowBetween | Flow from one set of nodes to another. |
| FlowGraph | Construct FlowGraph object |
| generalGenericID | A general generic identification algorithm template. |
| getAncestors | Get getAncestors of nodes in a graph. |
| getDescendants | Get descendants of nodes in a graph. |
| getHalfTrekSystem | Determines if a half-trek system exists in the mixed graph. |
| getMaxFlow | Size of largest HT system Y satisfying the HTC for a node v... |
| getMixedCompForNode | Get the mixed component of a node in a mixed subgraph. |
| getMixedGraph | Get the corresponding mixed graph |
| getParents | Get getParents of nodes in a graph. |
| getSiblings | Get getSiblings of nodes in a graph. |
| getTrekSystem | Determines if a trek system exists in the mixed graph. |
| globalID | Determines whether a mixed graph is globally identifiable. |
| graphID | Identifiability of linear structural equation models. |
| graphID.ancestralID | Determine generic identifiability of an acyclic mixed graph... |
| graphID.decompose | Determine generic identifiability by Tian Decomposition and... |
| graphID.genericID | Determine generic identifiability of a mixed graph. |
| graphID.htcID | Determines if a mixed graph is HTC-identifiable. |
| graphID.main | Helper function to handle a graph component. |
| graphID.nonHtcID | Check for generic infinite-to-one via the half-trek... |
| htcID | Determines which edges in a mixed graph are HTC-identifiable. |
| htcIdentifyStep | Perform one iteration of HTC identification. |
| htr | Get all HTR nodes from a set of nodes in a graph. |
| htrFrom | Half trek reachable nodes. |
| inducedSubgraph | Get the induced subgraph on a collection of nodes |
| isSibling | Are two nodes siblings? |
| L | Get directed adjacency matrix. |
| LatentDigraph | Construct a LatentDigraph object |
| LatentDigraphFixedOrder | Construct LatentDigraphFixedOrder object |
| latentDigraphHasSimpleNumbering | Checks that a LatentDigraph has appropriate node numbering |
| latentNodes | Get all latent nodes in the graph. |
| lfhtcID | Determines which edges in a latent digraph are... |
| lfhtcIdentifyStep | Perform one iteration of latent-factor HTC identification. |
| MixedGraph | Construct MixedGraph object |
| mixedGraphHasSimpleNumbering | Checks that a MixedGraph has appropriate node numbering |
| nodes | Get all nodes in the graph. |
| numLatents | Number of latent nodes in the graph. |
| numNodes | Number of nodes in the graph. |
| numObserved | Number of observed nodes in the graph. |
| O | Get adjacency matrix for bidirected part. |
| observedNodes | Get all observed nodes in the graph. |
| observedParents | Get the observed parents on a collection of nodes |
| parents | All parents of a collection of nodes. |
| plot | Plots the latent digraph |
| plotLatentDigraph | Plot a latent factor graph |
| plotMixedGraph | Plot a mixed graph |
| print.GenericIDResult | Prints a GenericIDResult object |
| print.LfhtcIDResult | Prints a LfhtcIDResult object |
| print.SEMIDResult | Prints a SEMIDResult object |
| semID | Identifiability of linear structural equation models. |
| SEMID-package | SEMID package documentation. |
| siblings | All siblings of a collection of nodes |
| stronglyConnectedComponent | Strongly connected component |
| subsetsOfSize | Returns all subsets of a certain size |
| tianComponent | Returns the Tian c-component of a node |
| tianDecompose | Performs the tian decomposition on the mixed graph |
| tianIdentifier | Identifies components in a tian decomposition |
| tianSigmaForComponent | Globally identify the covariance matrix of a C-component |
| toEx | Transforms a vector of node indices in the internal rep. into... |
| toIn | Transforms a vector of given node indices into their internal... |
| trekSeparationIdentifyStep | Perform one iteration of trek separation identification. |
| trFrom | Trek reachable nodes. |
| updateEdgeCapacities | Update edge capacities. |
| updateVertexCapacities | Update vertex capacities. |
| validateLatentNodesAreSources | A helper function to validate that latent nodes in a... |
| validateMatrices | A helper function to validate input matrices. |
| validateMatrix | A helper function to validate an input matrix. |
| validateNodes | A helper function to validate if input nodes are valid. |
| validateVarArgsEmpty | A helper function to validate that there are no variable... |
