Genes_SimCal: Genes_SimCal is a function to calculate similarity between a...
In SIGN: Similarity Identification in Gene Expression
Description
Usage
Arguments
Value
Description
Genes_SimCal is a function to calculate similarity between a set of samples
and 2 reference groups of samples
Usage
1
2
Genes_SimCal(ExpMat_Test, ExpMat_Ref1, ExpMat_Ref2, RefIDs, TestClassIter,
SampleIter)
Arguments
ExpMat_Test
Expression matrix for the test samples for which SIGN will
indetify the similarity with the 2 reference sataset
ExpMat_Ref1
Expression matrix for the 1st reference set fo samples
ExpMat_Ref2
Expression matrix for the 2nd reference set fo samples
RefIDs
Annotations corresponding to the 2 expression matrices
(1st and 2nd names are associated with the 1st and 2nd expression matrix and )
TestClassIter
Index to be matched with RefIDs for removal of test samples
from reference expression matrices
SampleIter
Index of samples in the test expression matrix exist in
referencece expression matrix 1 or 2
Value
Vector of similarity between the target samples and the 2 reference sets
SIGN documentation built on May 2, 2019, 11:05 a.m.
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Description Usage Arguments Value
Description
Genes_SimCal is a function to calculate similarity between a set of samples and 2 reference groups of samples
Usage
1 2 | Genes_SimCal(ExpMat_Test, ExpMat_Ref1, ExpMat_Ref2, RefIDs, TestClassIter,
SampleIter)
|
Arguments
ExpMat_Test |
Expression matrix for the test samples for which SIGN will indetify the similarity with the 2 reference sataset |
ExpMat_Ref1 |
Expression matrix for the 1st reference set fo samples |
ExpMat_Ref2 |
Expression matrix for the 2nd reference set fo samples |
RefIDs |
Annotations corresponding to the 2 expression matrices (1st and 2nd names are associated with the 1st and 2nd expression matrix and ) |
TestClassIter |
Index to be matched with RefIDs for removal of test samples from reference expression matrices |
SampleIter |
Index of samples in the test expression matrix exist in referencece expression matrix 1 or 2 |
Value
Vector of similarity between the target samples and the 2 reference sets
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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