SIGN_Ensemble_SimCal: SIGN_Ensemble_SimCal is a function for Generating list fo...
In SIGN: Similarity Identification in Gene Expression
Description
Usage
Arguments
Value
Description
SIGN_Ensemble_SimCal is a function for Generating list fo similarities based on
different pathway quantification methods and similarity measures
Usage
1
SIGN_Ensemble_SimCal(ExpList, RefClassID, TestClassID, GeneID, PathwaySets)
Arguments
ExpList
List of expression matrices for different groups of samples
used in the centroid classification scheme
RefClassID
Names of the matrices in the ExpList
TestClassID
ID of a matrix in ExpList to be used as test set
GeneID
Parameter to determine if gene annotations are provided as Symbols or EntrezIDs
PathwaySets
List of pathways containing gene annotations for each pathways
Value
List of similarities identified in both gene and pathway level
SIGN documentation built on May 2, 2019, 11:05 a.m.
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Description Usage Arguments Value
Description
SIGN_Ensemble_SimCal is a function for Generating list fo similarities based on different pathway quantification methods and similarity measures
Usage
1 | SIGN_Ensemble_SimCal(ExpList, RefClassID, TestClassID, GeneID, PathwaySets)
|
Arguments
ExpList |
List of expression matrices for different groups of samples used in the centroid classification scheme |
RefClassID |
Names of the matrices in the ExpList |
TestClassID |
ID of a matrix in ExpList to be used as test set |
GeneID |
Parameter to determine if gene annotations are provided as Symbols or EntrezIDs |
PathwaySets |
List of pathways containing gene annotations for each pathways |
Value
List of similarities identified in both gene and pathway level
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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