Description Usage Arguments Value
Similarities_Wrapper is wrapper to identify similarities between the expression of genes in target sample and the reference expression matrix
1 2 | Similarities_Wrapper(ExpMat_Test, ExpMat_Ref, GeneVec, PathwaySet, RefID,
TestClassIter, SampleIter)
|
ExpMat_Test |
Expression matrix of test samples |
ExpMat_Ref |
Expression matrix of reference samples |
GeneVec |
Vector of gene names |
PathwaySet |
List of pathways containing gene annotations for each pathways |
RefID |
Class of the reference set |
TestClassIter |
Class of the test set (if it is the same as reference set, the target test sample will be removed fro the reference set) |
SampleIter |
Target test sample in ExpMat_Testto be used for comparison with ExpMat_Ref |
List of similarities between the target sample and the expression matrix of reference samples
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