API for SIMplyBee
'AlphaSimR' Extension for Simulating Honeybee Populations and Breeding Programmes
| Global functions | |
|---|---|
| Colony-class | Man page |
| MultiColony-class | Man page |
| SIMplyBee | Man page |
| SIMplyBee-package | Man page |
| SimParamBee | Man page |
| [,MultiColony,character-method | Man page |
| [,MultiColony,integerOrNumericOrLogical-method | Man page |
| [<-,MultiColony,integerOrNumericOrLogicalOrCharacter,ANY,MultiCo | Man page |
| [[,MultiColony,character-method | Man page |
| [[,MultiColony,integerOrNumericOrLogical-method | Man page |
| [[<-,MultiColony,integerOrNumericOrLogicalOrCharacter,ANY,Colony | Man page |
| addCastePop | Man page Source code |
| addDrones | Man page Source code |
| addVirginQueens | Man page Source code |
| addWorkers | Man page Source code |
| areDronesPresent | Man page |
| areFathersPresent | Man page |
| areVirginQueensPresent | Man page |
| areWorkersPresent | Man page |
| buildUp | Man page Source code |
| c,ColonyOrNULL-method | Man page |
| c,MultiColony-method | Man page |
| c,MultiColonyOrNULL-method | Man page |
| c,NULLOrPop-method | Man page |
| calcBeeAlleleFreq | Man page Source code |
| calcBeeGRMIbd | Man page Source code |
| calcBeeGRMIbs | Man page Source code |
| calcColonyAa | Man page Source code |
| calcColonyBv | Man page Source code |
| calcColonyDd | Man page Source code |
| calcColonyGv | Man page Source code |
| calcColonyPheno | Man page Source code |
| calcColonyValue | Man page Source code |
| calcInheritanceCriterion | Man page Source code |
| calcPerformanceCriterion | Man page Source code |
| calcQueensPHomBrood | Man page Source code |
| calcSelectionCriterion | Man page Source code |
| collapse | Man page Source code |
| combine | Man page Source code |
| combineBeeGametes | Man page Source code |
| combineBeeGametesHaploDiploid | Man page Source code |
| createCastePop | Man page Source code |
| createColony | Man page Source code |
| createCrossPlan | Man page Source code |
| createDCA | Man page Source code |
| createDrones | Man page Source code |
| createMatingStationDCA | Man page Source code |
| createMultiColony | Man page Source code |
| createVirginQueens | Man page Source code |
| createWorkers | Man page Source code |
| cross | Man page Source code |
| downsize | Man page Source code |
| downsizePUnif | Man page Source code |
| editCsdLocus | Man page Source code |
| getAa | Man page Source code |
| getBv | Man page Source code |
| getCaste | Man page Source code |
| getCasteId | Man page Source code |
| getCastePop | Man page Source code |
| getCasteSex | Man page Source code |
| getCsdAlleles | Man page Source code |
| getCsdGeno | Man page Source code |
| getDd | Man page Source code |
| getDrones | Man page Source code |
| getDronesAa | Man page Source code |
| getDronesBv | Man page Source code |
| getDronesCsdAlleles | Man page Source code |
| getDronesCsdGeno | Man page Source code |
| getDronesDd | Man page Source code |
| getDronesGv | Man page Source code |
| getDronesIbdHaplo | Man page Source code |
| getDronesPheno | Man page Source code |
| getDronesQtlGeno | Man page Source code |
| getDronesQtlHaplo | Man page Source code |
| getDronesSegSiteGeno | Man page Source code |
| getDronesSegSiteHaplo | Man page Source code |
| getDronesSnpGeno | Man page Source code |
| getDronesSnpHaplo | Man page Source code |
| getEvents | Man page Source code |
| getFathers | Man page Source code |
| getFathersAa | Man page Source code |
| getFathersBv | Man page Source code |
| getFathersCsdAlleles | Man page Source code |
| getFathersCsdGeno | Man page Source code |
| getFathersDd | Man page Source code |
| getFathersGv | Man page Source code |
| getFathersIbdHaplo | Man page Source code |
| getFathersPheno | Man page Source code |
| getFathersQtlGeno | Man page Source code |
| getFathersQtlHaplo | Man page Source code |
| getFathersSegSiteGeno | Man page Source code |
| getFathersSegSiteHaplo | Man page Source code |
| getFathersSnpGeno | Man page Source code |
| getFathersSnpHaplo | Man page Source code |
| getGv | Man page Source code |
| getIbdHaplo | Man page Source code |
| getId | Man page Source code |
| getLocation | Man page Source code |
| getMisc | Man page Source code |
| getPheno | Man page Source code |
| getPooledGeno | Man page Source code |
| getQtlGeno | Man page Source code |
| getQtlHaplo | Man page Source code |
| getQueen | Man page Source code |
| getQueenAa | Man page Source code |
| getQueenAge | Man page Source code |
| getQueenBv | Man page Source code |
| getQueenCsdAlleles | Man page Source code |
| getQueenCsdGeno | Man page Source code |
| getQueenDd | Man page Source code |
| getQueenGv | Man page Source code |
| getQueenIbdHaplo | Man page Source code |
| getQueenPheno | Man page Source code |
| getQueenQtlGeno | Man page Source code |
| getQueenQtlHaplo | Man page Source code |
| getQueenSegSiteGeno | Man page Source code |
| getQueenSegSiteHaplo | Man page Source code |
| getQueenSnpGeno | Man page Source code |
| getQueenSnpHaplo | Man page Source code |
| getQueenYearOfBirth | Man page Source code |
| getSegSiteGeno | Man page Source code |
| getSegSiteHaplo | Man page Source code |
| getSnpGeno | Man page Source code |
| getSnpHaplo | Man page Source code |
| getVirginQueens | Man page Source code |
| getVirginQueensAa | Man page Source code |
| getVirginQueensBv | Man page Source code |
| getVirginQueensCsdAlleles | Man page Source code |
| getVirginQueensCsdGeno | Man page Source code |
| getVirginQueensDd | Man page Source code |
| getVirginQueensGv | Man page Source code |
| getVirginQueensIbdHaplo | Man page Source code |
| getVirginQueensPheno | Man page Source code |
| getVirginQueensQtlGeno | Man page Source code |
| getVirginQueensQtlHaplo | Man page Source code |
| getVirginQueensSegSiteGeno | Man page Source code |
| getVirginQueensSegSiteHaplo | Man page Source code |
| getVirginQueensSnpGeno | Man page Source code |
| getVirginQueensSnpHaplo | Man page Source code |
| getWorkers | Man page Source code |
| getWorkersAa | Man page Source code |
| getWorkersBv | Man page Source code |
| getWorkersCsdAlleles | Man page Source code |
| getWorkersCsdGeno | Man page Source code |
| getWorkersDd | Man page Source code |
| getWorkersGv | Man page Source code |
| getWorkersIbdHaplo | Man page Source code |
| getWorkersPheno | Man page Source code |
| getWorkersQtlGeno | Man page Source code |
| getWorkersQtlHaplo | Man page Source code |
| getWorkersSegSiteGeno | Man page Source code |
| getWorkersSegSiteHaplo | Man page Source code |
| getWorkersSnpGeno | Man page Source code |
| getWorkersSnpHaplo | Man page Source code |
| hasCollapsed | Man page Source code |
| hasSplit | Man page Source code |
| hasSuperseded | Man page Source code |
| hasSwarmed | Man page Source code |
| isCaste | Man page Source code |
| isColony | Man page Source code |
| isCsdActive | Man page Source code |
| isCsdHeterozygous | Man page Source code |
| isDrone | Man page Source code |
| isDronesPresent | Man page Source code |
| isEmpty | Man page Source code |
| isFather | Man page Source code |
| isFathersPresent | Man page Source code |
| isGenoHeterozygous | Man page Source code |
| isHeterozygous | Source code |
| isMultiColony | Man page Source code |
| isNULLColonies | Man page Source code |
| isProductive | Man page Source code |
| isQueen | Man page Source code |
| isQueenPresent | Man page Source code |
| isSimParamBee | Man page Source code |
| isVirginQueen | Man page |
| isVirginQueenPresent | Man page |
| isVirginQueens | Man page Source code |
| isVirginQueensPresent | Man page Source code |
| isWorker | Man page Source code |
| isWorkersPresent | Man page Source code |
| mapCasteToColonyAa | Man page Source code |
| mapCasteToColonyBv | Man page Source code |
| mapCasteToColonyDd | Man page Source code |
| mapCasteToColonyGv | Man page Source code |
| mapCasteToColonyPheno | Man page Source code |
| mapCasteToColonyValue | Man page Source code |
| mapLoci | Man page Source code |
| nCaste | Man page Source code |
| nColonies | Man page Source code |
| nCsdAlleles | Man page Source code |
| nDrones | Man page Source code |
| nDronesColonyPhenotype | Man page Source code |
| nDronesPoisson | Man page Source code |
| nDronesTruncPoisson | Man page Source code |
| nEmptyColonies | Man page Source code |
| nFathers | Man page Source code |
| nFathersPoisson | Man page Source code |
| nFathersTruncPoisson | Man page Source code |
| nHomBrood | Man page Source code |
| nNULLColonies | Man page Source code |
| nQueens | Man page Source code |
| nVirginQueens | Man page Source code |
| nVirginQueensColonyPhenotype | Man page Source code |
| nVirginQueensPoisson | Man page Source code |
| nVirginQueensTruncPoisson | Man page Source code |
| nWorkers | Man page Source code |
| nWorkersColonyPhenotype | Man page Source code |
| nWorkersPoisson | Man page Source code |
| nWorkersTruncPoisson | Man page Source code |
| pHomBrood | Man page Source code |
| pullCastePop | Man page Source code |
| pullColonies | Man page Source code |
| pullDroneGroupsFromDCA | Man page Source code |
| pullDrones | Man page Source code |
| pullInd | Man page Source code |
| pullQueen | Man page Source code |
| pullVirginQueens | Man page Source code |
| pullWorkers | Man page Source code |
| rcircle | Man page Source code |
| reQueen | Man page Source code |
| reduceDroneGeno | Man page Source code |
| reduceDroneHaplo | Man page Source code |
| removeCastePop | Man page Source code |
| removeColonies | Man page Source code |
| removeDrones | Man page Source code |
| removeQueen | Man page Source code |
| removeVirginQueens | Man page Source code |
| removeWorkers | Man page Source code |
| replaceCastePop | Man page Source code |
| replaceDrones | Man page Source code |
| replaceVirginQueens | Man page Source code |
| replaceWorkers | Man page Source code |
| resetEvents | Man page Source code |
| selectColonies | Man page Source code |
| setLocation | Man page Source code |
| setMisc | Man page Source code |
| setQueensYearOfBirth | Man page Source code |
| show,Colony-method | Man page |
| show,MultiColony-method | Man page |
| simulateHoneyBeeGenomes | Man page Source code |
| split | Man page Source code |
| splitPColonyStrength | Man page Source code |
| splitPUnif | Man page Source code |
| supersede | Man page Source code |
| swarm | Man page Source code |
| swarmPUnif | Man page Source code |
