getAa: Access epistasis values of individuals in a caste

In SIMplyBee: 'AlphaSimR' Extension for Simulating Honeybee Populations and Breeding Programmes

Access epistasis values of individuals in a caste

Description

Level 0 function that returns epistasis values of individuals in a caste.

Usage

getAa(x, caste = NULL, nInd = NULL, collapse = FALSE, simParamBee = NULL)

getQueenAa(x, collapse = FALSE, simParamBee = NULL)

getFathersAa(x, nInd = NULL, collapse = FALSE, simParamBee = NULL)

getVirginQueensAa(x, nInd = NULL, collapse = FALSE, simParamBee = NULL)

getWorkersAa(x, nInd = NULL, collapse = FALSE, simParamBee = NULL)

getDronesAa(x, nInd = NULL, collapse = FALSE, simParamBee = NULL)

Arguments

x	Pop-class, Colony-class, or MultiColony-class
caste	NULL or character, NULL when x is a Pop-class, and character when x is a Colony-class or MultiColony-class with the possible values of "queen", "fathers", "workers", "drones", "virginQueens", or "all"
nInd	numeric, number of individuals to access, if NULL all individuals are accessed, otherwise a random sample
collapse	logical, if the return value should be a single matrix with epistatic values of all the individuals
simParamBee	SimParamBee, global simulation parameters

Value

vector of epistasis values when x is Colony-class and list of vectors of epistasis values when x is MultiColony-class, named by colony id when x is MultiColony-class

# Not exporting this function, since the theory behind it is not fully developed

Functions

• getQueenAa(): Access epistasis value of the queen

• getFathersAa(): Access epistasis values of fathers

• getVirginQueensAa(): Access epistasis values of virgin queens

• getWorkersAa(): Access epistasis values of workers

• getDronesAa(): Access epistasis values of drones

See Also

dd and vignette(topic = "QuantitativeGenetics", package = "SIMplyBee")

SIMplyBee documentation built on Sept. 20, 2024, 5:07 p.m.