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This update introduces new functionality for the tumor growth simulator.
New functionality:
simulateTumor()
has been added. This allows the user to specify a custom disease model for more control over the kinds of mutations that can occur. See vignette for more details. bulkSample()
and randomBulkSamples()
to better simulate real sequencing data.Changes to existing functionality:
alleles
data frame which was returned by simulateTumor()
has been renamed to genotypes
to be biologically correct. Bug fixes:
visualizeTumor
, there was an issue where suggested package rgl
was not being used conditionally. Internal changes:
C++
code has been completely refactored for organization. This patch contains bug fixes. In addition, the dependence on R 4.0.0 is switched to 3.6.0, so that users on the old release can use the package.
Bug fixes:
pow()
in "post_processing.h" causes a compilation error on Solaris. Initial submission to CRAN.
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