Files in SKAT

SNP-Set (Sequence) Kernel Association Test

MD5

NAMESPACE

DESCRIPTION

R/SSD.R R/Power.R R/Binary_MAIN_ExactBin.R R/Binary_Result_Calibration.R R/Kernel.R R/SKAT_EMMAX.R R/Joint_CommonRare.R R/Main_SSD.R R/MAIN.R R/SKAT_Optimal.R R/SKAT_CompQuadForm.R R/SKAT_Logistic_VarMatching.R R/SKAT_Optimal_VarMatching.R R/Function_Power_Resampling.R R/Joint_CommonRare_Robust.R R/SKAT_Linear.R R/Binary_single.b.firth.R R/Sparse.R R/SKAT_Logistic.R R/MK_SSD_All_Output.R R/Binary_Function.R R/Binary_Etc.R R/Function.R R/X_Chrom.R R/Binary_Function1.R R/Binary_MAIN_Robust.R R/Power_Corr.R R/SKAT_Meta_Optimal.R R/Binary_MAIN.R R/Null_Model.R

src/Binary_ComputeExact.cpp

src/Binary_Permu_SKAT.cpp

src/setid_bim_index.cpp

src/Binary_global.h

src/Binary_ComputeExactSKATO.cpp

src/error_messages.h

src/mwo_reader.h

src/bed_reader.h

src/bed_reader.cpp

src/interface_to_R.h

src/Binary_ComputeExact.h

src/qfc.cpp

src/Binary_resampling.cpp

src/Binary_Permu_SKAT.h

src/Binary_HyperGeo.cpp

src/interface_to_R.cpp

src/Binary_global.cpp

src/setid_bim_index.h

src/kernel_func.cpp

src/mwo_reader.cpp

src/Binary_ComputeExactMC.h

src/DArray.h

src/Binary_ComputeExactMC.cpp

src/Binary_HyperGeo.h

src/interface_new.cpp

src/NPsort.h

inst/doc/SKAT.R inst/doc/SKAT.pdf

inst/doc/SKAT.Rnw

build/vignette.rds

vignettes/Example1_old.fam

vignettes/Example1_Ord.Cov

vignettes/SKATBinary.example.fam

vignettes/Example1.SetID

vignettes/SKATBinary.example.bed

vignettes/Example1_NoHeader.Cov

vignettes/SKATBinary.example.cov

vignettes/Example1_Weight.txt

vignettes/Example1.Cov

vignettes/Example1.fam

vignettes/SKATBinary.example.bim

vignettes/Example1.bed

vignettes/Example.zip

vignettes/SKAT.Rnw

vignettes/SKATBinary.example.SetID

vignettes/Example1.bim

data/datalist

data/SKATBinary.example.rda

data/SKAT.fam.example.rda

data/SKAT.example.ChrX.rda

data/SKAT.haplotypes.rda

data/SKAT.example.rda

man/Open_SSD.rd man/Read_Plink_FAM.rd man/SKATBinary_Robust.rd man/Power_Continuous.rd man/SKAT_Null_Model_MomentAdjust.rd man/Power_Logistic.rd man/SKAT.haplotypes.rd man/Get_Genotypes_SSD.rd man/Generate_SSD_SetID.rd man/SKATBinary.example.rd man/SKAT_NULL_emmaX.rd man/SKATBinary_Single.rd man/SKATBinary.rd man/Close_SSD.rd man/Get_ENT.rd man/SKAT.SSD.All.rd man/Read_SNP_WeightFile.rd man/SKAT_Null_Model.rd man/SKAT_ChrX.rd man/SKAT_CommonRare_Robust.rd man/Get_Logistic_Weights.rd man/QQPlot_Adj.rd man/SKAT_CommonRare.rd man/Get_Resampling_Pvalue.rd man/SSD_FILE_OPEN.rd man/SKAT.example.rd man/SKAT.example.ChrX.rd man/SKAT.rd man/Get_RequiredSampleSize.rd man/SKAT.fam.example.rd man/Resampling_FWER.rd

SKAT documentation built on Jan. 15, 2023, 5:10 p.m.