SKAT.haplotypes: Haplotype dataset for power calculation
In SKAT: SNP-Set (Sequence) Kernel Association Test
SKAT.haplotypes R Documentation
Haplotype dataset for power calculation
Description
Haplotype dataset generated by COSI with mimicking linkage disequilibrium (LD) structure of European ancestry.
Format
This list object contains the following objects:
- Haplotype
a numeric matrix of 10,000 haplotypes over 200k BP region.
Each row represents a different haplotype, and each column represents a different SNP marker.
It is generated by the calibration coalescent model (COSI) with mimicking LD structure of European ancestry.
- SNPInfo
a dataframe of SNP information.
References
Schaffner, S.F. and Foo, C. and Gabriel, S. and Reich, D. and Daly, M.J. and Altshuler, D. (2005) Calibrating a coalescent simulation of human genome sequence variation.
Genome Research, 15, 1576-1583.
SKAT documentation built on Jan. 15, 2023, 5:10 p.m.
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| SKAT.haplotypes | R Documentation |
Haplotype dataset for power calculation
Description
Haplotype dataset generated by COSI with mimicking linkage disequilibrium (LD) structure of European ancestry.
Format
This list object contains the following objects:
- Haplotype
a numeric matrix of 10,000 haplotypes over 200k BP region. Each row represents a different haplotype, and each column represents a different SNP marker. It is generated by the calibration coalescent model (COSI) with mimicking LD structure of European ancestry.
- SNPInfo
a dataframe of SNP information.
References
Schaffner, S.F. and Foo, C. and Gabriel, S. and Reich, D. and Daly, M.J. and Altshuler, D. (2005) Calibrating a coalescent simulation of human genome sequence variation. Genome Research, 15, 1576-1583.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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