SNPfiltR: SNPfiltR: A package for interactively visualizing and...
In SNPfiltR: Interactively Filter SNP Datasets
SNPfiltR R Documentation
SNPfiltR: A package for interactively visualizing and filtering SNP datasets
Description
The SNPfiltR package allows users to interactively visualize the effects of
relevant filters on their datasets in order to optimize filtering parameters
rather than simply following historical precedent. Each function takes a
variant call format (vcf) file, stored in local memory as a vcfR object, as input.
Most functions can be run without specified cutoffs, in order to visualize the
distribution of the parameter of interest in your given dataset. Then the same
function can be run with a specified cutoff, and a filtered vcfR object
will be returned. For detailed documentation and vignettes showing fully implemented
SNP filtering pipelines, please go to: devonderaad.github.io/SNPfiltR
SNPfiltR documentation built on March 31, 2023, 8:57 p.m.
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| SNPfiltR | R Documentation |
SNPfiltR: A package for interactively visualizing and filtering SNP datasets
Description
The SNPfiltR package allows users to interactively visualize the effects of relevant filters on their datasets in order to optimize filtering parameters rather than simply following historical precedent. Each function takes a variant call format (vcf) file, stored in local memory as a vcfR object, as input. Most functions can be run without specified cutoffs, in order to visualize the distribution of the parameter of interest in your given dataset. Then the same function can be run with a specified cutoff, and a filtered vcfR object will be returned. For detailed documentation and vignettes showing fully implemented SNP filtering pipelines, please go to: devonderaad.github.io/SNPfiltR
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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