filter_biallelic: Remove SNPs with more than two alleles
In SNPfiltR: Interactively Filter SNP Datasets
View source: R/filter_biallelic.R
filter_biallelic R Documentation
Remove SNPs with more than two alleles
Description
This function simply removes any SNPs from the vcf file which contains more than
two alleles. Many downstream applications require
SNPs to be biallelic, so this filter is generally a good idea during processing.
Usage
filter_biallelic(vcfR)
Arguments
vcfR
a vcfR object
Value
a vcfR object with SNPs containing more than two alleles removed
Examples
filter_biallelic(vcfR = SNPfiltR::vcfR.example)
SNPfiltR documentation built on March 31, 2023, 8:57 p.m.
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View source: R/filter_biallelic.R
| filter_biallelic | R Documentation |
Remove SNPs with more than two alleles
Description
This function simply removes any SNPs from the vcf file which contains more than two alleles. Many downstream applications require SNPs to be biallelic, so this filter is generally a good idea during processing.
Usage
filter_biallelic(vcfR)
Arguments
vcfR |
a vcfR object |
Value
a vcfR object with SNPs containing more than two alleles removed
Examples
filter_biallelic(vcfR = SNPfiltR::vcfR.example)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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