Man pages for SNPknock
Knockoffs for Hidden Markov Models and Genetic Data

assemble_pEmitCompute the genotype emission distributions based on the...
assemble_pEmit_phasedCompute the haplotype emission distributions based on the...
assemble_pInitCompute the genotype initial distributions based on the...
assemble_pInit_phasedCompute the haplotype initial distributions based on the...
assemble_QCompute the genotype transition matrices based on the...
compute_Q1Compute the haplotype transition matrices based on the...
GroupGenotypes_wrapperWrapper for GroupGenotypes
GroupHaplotypes_wrapperWrapper for GroupHaplotypes
knockoffDMCGroup knockoffs of discrete Markov chains
knockoffDMC_wrapperWrapper for DMC group knockoffs
knockoffGenotypesGroup-knockoffs of unphased genotypes
knockoffHaplotypesGroup-knockoffs of phased haplotypes
knockoffHMMGroup knockoffs of hidden Markov models
knockoffHMM_wrapperWrapper for HMM group knockoffs
loadEMParametersRead the files produced by fastPHASE
loadHMMLoad HMM parameters fitted by fastPHASE
rand_weightedRandom sampling from discrete distribution
runFastPhaseFit an HMM to genetic data using fastPHASE
sampleDMCSample discrete Markov chains
sampleHMMSample hidden Markov models
writeXtoInpConvert genotypes X into the fastPHASE input format
SNPknock documentation built on May 18, 2019, 1:03 a.m.