Knockoffs for Hidden Markov Models and Genetic Data

assemble_pEmit | Compute the genotype emission distributions based on the... |

assemble_pEmit_phased | Compute the haplotype emission distributions based on the... |

assemble_pInit | Compute the genotype initial distributions based on the... |

assemble_pInit_phased | Compute the haplotype initial distributions based on the... |

assemble_Q | Compute the genotype transition matrices based on the... |

compute_Q1 | Compute the haplotype transition matrices based on the... |

GenotypeModel_wrapper | Wrapper for Genotype model |

HaplotypeModel_wrapper | Wrapper for Haplotype model |

knockoffDMC_wrapper | Wrapper for DMC knockoffs |

knockoffHMM_wrapper | Wrapper for HMM knockoffs |

loadEMParameters | Read the files produced by fastPHASE |

rand_weighted | Random sampling from discrete distribution |

SNPknock.fp.loadFit | Load the parameter estimates obtained by fastPHASE |

SNPknock.fp.loadFit_hmm | Load the parameter estimates obtained by fastPHASE and... |

SNPknock.fp.runFastPhase | Calls fastPHASE to fit an HMM to genotype data |

SNPknock.fp.writeX | Convert a genetic matrix X into the fastPHASE input format |

SNPknock.knockoffDMC | Knockoff copies of a discrete Markov chain |

SNPknock.knockoffGenotypes | Knockoff copies of unphased genotypes |

SNPknock.knockoffHaplotypes | Knockoff copies of phased haplotypes |

SNPknock.knockoffHMM | Knockoff copies of a hidden Markov model |

SNPknock.models.sampleDMC | Sample discrete Markov chains |

SNPknock.models.sampleHMM | Sample hidden Markov models |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.