Man pages for SNPknock
Knockoffs for Hidden Markov Models and Genetic Data

assemble_pEmitCompute the genotype emission distributions based on the...
assemble_pEmit_phasedCompute the haplotype emission distributions based on the...
assemble_pInitCompute the genotype initial distributions based on the...
assemble_pInit_phasedCompute the haplotype initial distributions based on the...
assemble_QCompute the genotype transition matrices based on the...
compute_Q1Compute the haplotype transition matrices based on the...
GenotypeModel_wrapperWrapper for Genotype model
HaplotypeModel_wrapperWrapper for Haplotype model
knockoffDMC_wrapperWrapper for DMC knockoffs
knockoffHMM_wrapperWrapper for HMM knockoffs
loadEMParametersRead the files produced by fastPHASE
rand_weightedRandom sampling from discrete distribution
SNPknock.fp.loadFitLoad the parameter estimates obtained by fastPHASE
SNPknock.fp.loadFit_hmmLoad the parameter estimates obtained by fastPHASE and...
SNPknock.fp.runFastPhaseCalls fastPHASE to fit an HMM to genotype data
SNPknock.fp.writeXConvert a genetic matrix X into the fastPHASE input format
SNPknock.knockoffDMCKnockoff copies of a discrete Markov chain
SNPknock.knockoffGenotypesKnockoff copies of unphased genotypes
SNPknock.knockoffHaplotypesKnockoff copies of phased haplotypes
SNPknock.knockoffHMMKnockoff copies of a hidden Markov model
SNPknock.models.sampleDMCSample discrete Markov chains
SNPknock.models.sampleHMMSample hidden Markov models
SNPknock documentation built on May 31, 2018, 1:04 a.m.