SNPtools: Accessing, subsetting and plotting mouse SNPs.
Version 1.1

This package queries the SNPs data sets and makes plots of genes and SNPs. This package allows users to access these data sets once they have been compiled into one file and indexed with Tabix (http://samtools.sourceforge.net/tabix.shtml). There are functions to retrieve SNPs, subset them for specific strains, obtain only SNPs that are polymorphic for a subset of strains, plot SNPs and look for certain allele patterns in SNPs. We have also added functions to access indels and structural variants.

Package details

AuthorDaniel Gatti
Date of publication2013-07-03 14:07:14
MaintainerDaniel Gatti <Dan.Gatti@jax.org>
LicenseGPL-3
Version1.1
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("SNPtools")

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SNPtools documentation built on May 29, 2017, 3:12 p.m.