SNPtools-package: Accessing, subsetting and plotting mouse SNPs.
In SNPtools: Accessing, subsetting and plotting mouse SNPs.
Description
There are several large mouse SNP data sets (Sanger, MouseHapMap, Perlegen, UNC). This package allows users to access these data sets once they have been compiled into one file and indexed with Tabix (http://samtools.sourceforge.net/tabix.shtml). There are functions to retrieve SNPs, subset them for specific strains, obtain only SNPs that are ploymorphic for a subset of strains, plot SNPs and look for certain allele pattens in SNPs.
Details
Package: SNPmanipulation
Type: Package
Version: 1.0
Dependencies: R (>= 2.10), IRanges, GenomicRanges, Biostrings, Rsamtools
Date: 2012-01-16
License: GPL-3
Author(s)
Daniel Gatti: Dan.Gatti@jax.org
SNPtools documentation built on May 29, 2017, 3:12 p.m.
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Description
There are several large mouse SNP data sets (Sanger, MouseHapMap, Perlegen, UNC). This package allows users to access these data sets once they have been compiled into one file and indexed with Tabix (http://samtools.sourceforge.net/tabix.shtml). There are functions to retrieve SNPs, subset them for specific strains, obtain only SNPs that are ploymorphic for a subset of strains, plot SNPs and look for certain allele pattens in SNPs.
Details
| Package: | SNPmanipulation |
| Type: | Package |
| Version: | 1.0 |
| Dependencies: R (>= 2.10), IRanges, GenomicRanges, Biostrings, Rsamtools Date: | 2012-01-16 |
| License: | GPL-3 |
Author(s)
Daniel Gatti: Dan.Gatti@jax.org
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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