get.strains: get.strains
In SNPtools: Accessing, subsetting and plotting mouse SNPs.
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Get available strain names for a set of strains from a variant file.
Usage
1
2
get.strains(
file = "http://cgd.jax.org/tools/SNPtools/Build38/sanger.snps.NCBI38.txt.gz")
Arguments
file
Character, full path to the variants file to use. Default is the file at the Center for Genome Dynamics at The Jackson Laboratory.
Value
Character vector of strain names in the variant file.
Author(s)
Daniel Gatti
Examples
1
2
3
4
5
6
## Not run:
available.strains = get.strains()
strains = available.strains[c(2, 5, 8, 9, 13:15, 17)]
snps = get.variants(chr = 7, start = 103, end = 105, strains = strains)
## End(Not run)
SNPtools documentation built on May 29, 2017, 3:12 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Get available strain names for a set of strains from a variant file.
Usage
1 2 | get.strains(
file = "http://cgd.jax.org/tools/SNPtools/Build38/sanger.snps.NCBI38.txt.gz")
|
Arguments
file |
Character, full path to the variants file to use. Default is the file at the Center for Genome Dynamics at The Jackson Laboratory. |
Value
Character vector of strain names in the variant file.
Author(s)
Daniel Gatti
Examples
1 2 3 4 5 6 | ## Not run:
available.strains = get.strains()
strains = available.strains[c(2, 5, 8, 9, 13:15, 17)]
snps = get.variants(chr = 7, start = 103, end = 105, strains = strains)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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